Result of FASTA (omim) for
pF1KB6728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6728, 137 aa
1>>>pF1KB6728 137 - 137 aa - 137 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1292+/-0.000377; mu= 11.5411+/- 0.023
mean_var=54.6227+/-10.320, 0's: 0 Z-trim(111.6): 12 B-trim: 0 in 0/53
Lambda= 0.173535
statistics sampled from 20255 (20263) to 20255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.238), width: 16
Scan time: 3.930
The best scores are: opt bits E(85289)
NP_000982 (OMIM: 603638) 60S ribosomal protein L28 ( 137) 879 228.0 3.8e-60
NP_001129606 (OMIM: 603638) 60S ribosomal protein ( 163) 705 184.4 5.8e-47
NP_001129607 (OMIM: 603638) 60S ribosomal protein ( 169) 704 184.2 7.1e-47
NP_001129608 (OMIM: 603638) 60S ribosomal protein ( 87) 457 122.2 1.6e-28
NP_001129609 (OMIM: 603638) 60S ribosomal protein ( 69) 447 119.7 7.5e-28
>>NP_000982 (OMIM: 603638) 60S ribosomal protein L28 iso (137 aa)
initn: 879 init1: 879 opt: 879 Z-score: 1200.8 bits: 228.0 E(85289): 3.8e-60
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
70 80 90 100 110 120
130
pF1KB6 QKPVMVKRKRTRPTKSS
:::::::::::::::::
NP_000 QKPVMVKRKRTRPTKSS
130
>>NP_001129606 (OMIM: 603638) 60S ribosomal protein L28 (163 aa)
initn: 717 init1: 705 opt: 705 Z-score: 964.1 bits: 184.4 E(85289): 5.8e-47
Smith-Waterman score: 705; 98.2% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::::::::::::::::::::::::::::::::::::::::::..
NP_001 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMVSWGLGIRLGET
70 80 90 100 110 120
130
pF1KB6 QKPVMVKRKRTRPTKSS
NP_001 GQCCGEGPPTTGCNMGWRGMDSCFQPTPHTQHWPRGRLVECMG
130 140 150 160
>>NP_001129607 (OMIM: 603638) 60S ribosomal protein L28 (169 aa)
initn: 704 init1: 704 opt: 704 Z-score: 962.5 bits: 184.2 E(85289): 7.1e-47
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMDMLASTGSGLCC
70 80 90 100 110 120
130
pF1KB6 QKPVMVKRKRTRPTKSS
NP_001 SVAVQPWASSSTSLCLRTLICNMRVDRPYYSGLMRRLNVQNLLDCAHKS
130 140 150 160
>>NP_001129608 (OMIM: 603638) 60S ribosomal protein L28 (87 aa)
initn: 490 init1: 457 opt: 457 Z-score: 632.9 bits: 122.2 E(85289): 1.6e-28
Smith-Waterman score: 457; 98.6% identity (100.0% similar) in 70 aa overlap (1-70:1-70)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
:::::::::.
NP_001 VVVIKRRSGEFCLVWARERPLSRVWEL
70 80
>>NP_001129609 (OMIM: 603638) 60S ribosomal protein L28 (69 aa)
initn: 460 init1: 447 opt: 447 Z-score: 621.0 bits: 119.7 E(85289): 7.5e-28
Smith-Waterman score: 447; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB6 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS
::::::::
NP_001 VVVIKRRSE
137 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:39:20 2016 done: Fri Nov 4 23:39:20 2016
Total Scan time: 3.930 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]