FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6730, 138 aa
  1>>>pF1KB6730 138 - 138 aa - 138 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1786+/-0.000507; mu= 9.2851+/- 0.031
 mean_var=98.3436+/-19.727, 0's: 0 Z-trim(117.8): 5  B-trim: 0 in 0/52
 Lambda= 0.129331
 statistics sampled from 18654 (18659) to 18654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.875), E-opt: 0.2 (0.573), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS10490.1 HCFC1R1 gene_id:54985|Hs108|chr16      ( 138)  961 187.7 1.9e-48
CCDS73815.1 HCFC1R1 gene_id:54985|Hs108|chr16      ( 136)  819 161.2 1.8e-40
CCDS76810.1 HCFC1R1 gene_id:54985|Hs108|chr16      (  98)  685 136.2 4.6e-33
CCDS32375.1 HCFC1R1 gene_id:54985|Hs108|chr16      ( 119)  620 124.1 2.4e-29


>>CCDS10490.1 HCFC1R1 gene_id:54985|Hs108|chr16           (138 aa)
 initn: 961 init1: 961 opt: 961  Z-score: 983.3  bits: 187.7 E(32554): 1.9e-48
Smith-Waterman score: 961; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB6 MILQQPLQRGPQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEEEQEPLRKQFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MILQQPLQRGPQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEEEQEPLRKQFLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG
               70        80        90       100       110       120

              130        
pF1KB6 DTPSPPYPATPAGDIMEL
       ::::::::::::::::::
CCDS10 DTPSPPYPATPAGDIMEL
              130        

>>CCDS73815.1 HCFC1R1 gene_id:54985|Hs108|chr16           (136 aa)
 initn: 827 init1: 619 opt: 819  Z-score: 840.2  bits: 161.2 E(32554): 1.8e-40
Smith-Waterman score: 819; 87.8% identity (89.2% similar) in 139 aa overlap (1-138:1-136)

               10        20        30        40         50         
pF1KB6 MILQQPLQRGPQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEE-EQEPLRKQFL
       :::::::::::::::::::::::::::::::  :    : .:    :    .::::::::
CCDS73 MILQQPLQRGPQGGAQRLPRAALGVTWGLDARLP---PVSVSQPASLPSLPREPLRKQFL
               10        20        30           40        50       

      60        70        80        90       100       110         
pF1KB6 SEENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SEENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRL
        60        70        80        90       100       110       

     120       130        
pF1KB6 GDTPSPPYPATPAGDIMEL
       :::::::::::::::::::
CCDS73 GDTPSPPYPATPAGDIMEL
       120       130      

>>CCDS76810.1 HCFC1R1 gene_id:54985|Hs108|chr16           (98 aa)
 initn: 685 init1: 685 opt: 685  Z-score: 707.2  bits: 136.2 E(32554): 4.6e-33
Smith-Waterman score: 685; 100.0% identity (100.0% similar) in 98 aa overlap (41-138:1-98)

               20        30        40        50        60        70
pF1KB6 PQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEEEQEPLRKQFLSEENMATHFSQ
                                     ::::::::::::::::::::::::::::::
CCDS76                               MSTKRRLEEEQEPLRKQFLSEENMATHFSQ
                                             10        20        30

               80        90       100       110       120       130
pF1KB6 LSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPAT
               40        50        60        70        80        90

               
pF1KB6 PAGDIMEL
       ::::::::
CCDS76 PAGDIMEL
               

>>CCDS32375.1 HCFC1R1 gene_id:54985|Hs108|chr16           (119 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 640.4  bits: 124.1 E(32554): 2.4e-29
Smith-Waterman score: 787; 85.5% identity (86.2% similar) in 138 aa overlap (1-138:1-119)

               10        20        30        40        50        60
pF1KB6 MILQQPLQRGPQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEEEQEPLRKQFLS
       :::::::::::::::::::::::::::::::                   .:::::::::
CCDS32 MILQQPLQRGPQGGAQRLPRAALGVTWGLDA-------------------REPLRKQFLS
               10        20        30                           40 

               70        80        90       100       110       120
pF1KB6 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLG
              50        60        70        80        90       100 

              130        
pF1KB6 DTPSPPYPATPAGDIMEL
       ::::::::::::::::::
CCDS32 DTPSPPYPATPAGDIMEL
             110         




138 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:53:03 2016 done: Sat Nov  5 13:53:03 2016
 Total Scan time:  2.080 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]