FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6731, 95 aa
  1>>>pF1KB6731 95 - 95 aa - 95 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6688+/-0.000307; mu= 11.9421+/- 0.019
 mean_var=54.9894+/-10.769, 0's: 0 Z-trim(115.7): 12  B-trim: 25 in 2/54
 Lambda= 0.172956
 statistics sampled from 26373 (26385) to 26373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.309), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(85289)
NP_067000 (OMIM: 607282) U6 snRNA-associated Sm-li (  95)  615 160.8 2.9e-40
NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-li ( 139)  162 47.9 4.3e-06
NP_001239058 (OMIM: 607284) U6 snRNA-associated Sm ( 125)  146 43.9 6.2e-05
NP_008869 (OMIM: 601063) small nuclear ribonucleop ( 119)  129 39.6  0.0011


>>NP_067000 (OMIM: 607282) U6 snRNA-associated Sm-like p  (95 aa)
 initn: 615 init1: 615 opt: 615  Z-score: 843.7  bits: 160.8 E(85289): 2.9e-40
Smith-Waterman score: 615; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KB6 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
               10        20        30        40        50        60

               70        80        90     
pF1KB6 FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
       :::::::::::::::::::::::::::::::::::
NP_067 FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
               70        80        90     

>>NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-like p  (139 aa)
 initn: 150 init1:  89 opt: 162  Z-score: 230.4  bits: 47.9 E(85289): 4.3e-06
Smith-Waterman score: 162; 32.0% identity (65.0% similar) in 100 aa overlap (1-95:1-97)

               10        20        30        40          50        
pF1KB6 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK
       ::  :..:.  .. ..:::::  .  : : : :...::.: ..  :  : .:. .:    
NP_036 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P
               10        20        30        40        50          

       60        70           80        90                         
pF1KB6 NCFIRGSVVRYVQLP---ADEVDTQLLQDAARKEALQQKQ                    
       .:.::::...:...:    : :  ...  .  . .:::..                    
NP_036 ECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGR
        60        70        80        90       100       110       

NP_036 GGIPGTGRGQPEKKPGRQAGKQ
       120       130         

>>NP_001239058 (OMIM: 607284) U6 snRNA-associated Sm-lik  (125 aa)
 initn: 132 init1:  71 opt: 146  Z-score: 209.5  bits: 43.9 E(85289): 6.2e-05
Smith-Waterman score: 146; 32.6% identity (65.1% similar) in 86 aa overlap (15-95:1-83)

               10        20        30        40          50        
pF1KB6 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK
                     ..:::::  .  : : : :...::.: ..  :  : .:. .:    
NP_001               MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P
                             10        20        30        40      

       60        70           80        90                         
pF1KB6 NCFIRGSVVRYVQLP---ADEVDTQLLQDAARKEALQQKQ                    
       .:.::::...:...:    : :  ...  .  . .:::..                    
NP_001 ECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGR
            50        60        70        80        90       100   

NP_001 GGIPGTGRGQPEKKPGRQAGKQ
           110       120     

>>NP_008869 (OMIM: 601063) small nuclear ribonucleoprote  (119 aa)
 initn: 103 init1:  69 opt: 129  Z-score: 186.9  bits: 39.6 E(85289): 0.0011
Smith-Waterman score: 129; 31.2% identity (61.5% similar) in 96 aa overlap (1-95:1-93)

               10        20        30        40        50        60
pF1KB6 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
       : .  :. .:  . :..::::  .. ::. .::  .: .:  ...:  .. : .: . . 
NP_008 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS-
               10        20        30        40        50          

               70         80        90                             
pF1KB6 FIRGSVVRYVQLPAD-EVDTQLLQDAARKEALQQKQ                        
        :::. .::  :: .  .:: :: :.  :   ....                        
NP_008 -IRGNNIRYFILPDSLPLDT-LLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP
       60        70         80        90       100       110       

NP_008 RR
         




95 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:40:31 2016 done: Fri Nov  4 23:40:32 2016
 Total Scan time:  3.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]