Result of FASTA (ccds) for
pF1KB6733
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6733, 95 aa
1>>>pF1KB6733 95 - 95 aa - 95 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6486+/-0.000683; mu= 6.3945+/- 0.041
mean_var=55.2926+/-11.030, 0's: 0 Z-trim(108.6): 11 B-trim: 3 in 1/50
Lambda= 0.172481
statistics sampled from 10308 (10317) to 10308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.317), width: 16
Scan time: 1.150
The best scores are: opt bits E(32554)
CCDS45774.1 SUMO2 gene_id:6613|Hs108|chr17 ( 95) 636 165.9 3.4e-42
CCDS33587.1 SUMO3 gene_id:6612|Hs108|chr21 ( 103) 599 156.7 2.2e-39
CCDS34549.1 SUMO4 gene_id:387082|Hs108|chr6 ( 95) 533 140.3 1.7e-34
CCDS45773.1 SUMO2 gene_id:6613|Hs108|chr17 ( 71) 339 92.0 4.5e-20
CCDS2352.1 SUMO1 gene_id:7341|Hs108|chr2 ( 101) 291 80.1 2.5e-16
CCDS68220.1 SUMO3 gene_id:6612|Hs108|chr21 ( 141) 291 80.1 3.4e-16
CCDS46493.1 SUMO1 gene_id:7341|Hs108|chr2 ( 76) 254 70.8 1.1e-13
>>CCDS45774.1 SUMO2 gene_id:6613|Hs108|chr17 (95 aa)
initn: 636 init1: 636 opt: 636 Z-score: 871.1 bits: 165.9 E(32554): 3.4e-42
Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)
10 20 30 40 50 60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
10 20 30 40 50 60
70 80 90
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
:::::::::::::::::::::::::::::::::::
CCDS45 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
70 80 90
>>CCDS33587.1 SUMO3 gene_id:6612|Hs108|chr21 (103 aa)
initn: 537 init1: 537 opt: 599 Z-score: 820.7 bits: 156.7 E(32554): 2.2e-39
Smith-Waterman score: 599; 96.8% identity (98.9% similar) in 94 aa overlap (1-94:1-93)
10 20 30 40 50 60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
:..::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
10 20 30 40 50
70 80 90
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
::::::::::::::::::::::::::::::::::
CCDS33 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF
60 70 80 90 100
>>CCDS34549.1 SUMO4 gene_id:387082|Hs108|chr6 (95 aa)
initn: 533 init1: 533 opt: 533 Z-score: 732.6 bits: 140.3 E(32554): 1.7e-34
Smith-Waterman score: 533; 85.3% identity (92.6% similar) in 95 aa overlap (1-95:1-95)
10 20 30 40 50 60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
::.::: : ::::::.::::::::::::::::::::.:::::::::::: .:::..::::
CCDS34 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
10 20 30 40 50 60
70 80 90
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
:: ::::. :: ::::::::::::::::: :::::
CCDS34 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
70 80 90
>>CCDS45773.1 SUMO2 gene_id:6613|Hs108|chr17 (71 aa)
initn: 346 init1: 339 opt: 339 Z-score: 473.9 bits: 92.0 E(32554): 4.5e-20
Smith-Waterman score: 413; 74.7% identity (74.7% similar) in 95 aa overlap (1-95:1-71)
10 20 30 40 50 60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ---------
10 20 30 40 50
70 80 90
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
::::::::::::::::::::
CCDS45 ---------------LEMEDEDTIDVFQQQTGGVY
60 70
>>CCDS2352.1 SUMO1 gene_id:7341|Hs108|chr2 (101 aa)
initn: 286 init1: 286 opt: 291 Z-score: 406.6 bits: 80.1 E(32554): 2.5e-16
Smith-Waterman score: 291; 45.4% identity (78.4% similar) in 97 aa overlap (1-93:1-97)
10 20 30 40 50
pF1KB6 MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR
:.:.. : ... .....:.::: :::.: ..::.: : :.:: ..::.:::. :
CCDS23 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
10 20 30 40 50 60
60 70 80 90
pF1KB6 QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
..:: :.:: : .. :: .: ::.::.:.:.:.::::
CCDS23 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
70 80 90 100
>>CCDS68220.1 SUMO3 gene_id:6612|Hs108|chr21 (141 aa)
initn: 291 init1: 291 opt: 291 Z-score: 404.1 bits: 80.1 E(32554): 3.4e-16
Smith-Waterman score: 491; 69.3% identity (69.3% similar) in 127 aa overlap (6-94:6-131)
10 20 30 40 50
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ---------
::::::::: ::::::::::::::::::::::::::::::::::::
CCDS68 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQVRHLAPPQS
10 20 30 40 50
60 70 80
pF1KB6 -----------------------------GLSMRQIRFRFDGQPINETDTPAQLEMEDED
:::::::::::::::::::::::::::::::
CCDS68 LPVCALVLCVPGIPRARASRGWTQMQLPEGLSMRQIRFRFDGQPINETDTPAQLEMEDED
60 70 80 90 100 110
90
pF1KB6 TIDVFQQQTGGVY
::::::::::::
CCDS68 TIDVFQQQTGGVPESSLAGHSF
120 130 140
>>CCDS46493.1 SUMO1 gene_id:7341|Hs108|chr2 (76 aa)
initn: 254 init1: 254 opt: 254 Z-score: 359.0 bits: 70.8 E(32554): 1.1e-13
Smith-Waterman score: 254; 50.0% identity (80.6% similar) in 72 aa overlap (22-93:1-72)
10 20 30 40 50 60
pF1KB6 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
.. ::.: ..::.: : :.:: ..::.:::. : ..::
CCDS46 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF
10 20 30
70 80 90
pF1KB6 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
:.:: : .. :: .: ::.::.:.:.:.::::
CCDS46 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
40 50 60 70
95 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:35:19 2016 done: Fri Nov 4 15:35:20 2016
Total Scan time: 1.150 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]