Result of FASTA (ccds) for
pF1KB6734
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6734, 138 aa
1>>>pF1KB6734 138 - 138 aa - 138 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1791+/-0.000647; mu= 11.7198+/- 0.039
mean_var=68.1362+/-13.207, 0's: 0 Z-trim(111.9): 20 B-trim: 17 in 1/49
Lambda= 0.155377
statistics sampled from 12749 (12765) to 12749 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.392), width: 16
Scan time: 1.700
The best scores are: opt bits E(32554)
CCDS202.1 PLA2G5 gene_id:5322|Hs108|chr1 ( 138) 1052 243.9 2.4e-65
CCDS203.1 PLA2G2D gene_id:26279|Hs108|chr1 ( 145) 473 114.1 2.9e-26
CCDS201.1 PLA2G2A gene_id:5320|Hs108|chr1 ( 144) 462 111.6 1.6e-25
CCDS200.1 PLA2G2E gene_id:30814|Hs108|chr1 ( 142) 428 104.0 3.1e-23
CCDS204.2 PLA2G2F gene_id:64600|Hs108|chr1 ( 211) 382 93.8 5.5e-20
CCDS10555.1 PLA2G10 gene_id:8399|Hs108|chr16 ( 165) 344 85.2 1.7e-17
CCDS9195.1 PLA2G1B gene_id:5319|Hs108|chr12 ( 148) 262 66.8 5.2e-12
>>CCDS202.1 PLA2G5 gene_id:5322|Hs108|chr1 (138 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 1286.6 bits: 243.9 E(32554): 2.4e-65
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB6 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 DWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKR
70 80 90 100 110 120
130
pF1KB6 NLRSYNPQYQYFPNILCS
::::::::::::::::::
CCDS20 NLRSYNPQYQYFPNILCS
130
>>CCDS203.1 PLA2G2D gene_id:26279|Hs108|chr1 (145 aa)
initn: 463 init1: 343 opt: 473 Z-score: 584.9 bits: 114.1 E(32554): 2.9e-26
Smith-Waterman score: 473; 45.3% identity (75.0% similar) in 128 aa overlap (11-137:12-138)
10 20 30 40 50
pF1KB6 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDG
.: .: .:::.:.:..:...:::: . .: :::.:: :::: :::.
CCDS20 MELALLCGLVVMAGVIP-IQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDA
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 TDWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTC-EPGPFCHVNLCACDRKLVYCL
::::: .:: :: .:. .::.: . :.: :. : . : . : .:. .:::::.....::
CCDS20 TDWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVAFCL
60 70 80 90 100 110
120 130
pF1KB6 KRNLRSYNPQYQYFPNILCS
:::: .:. . ... :
CCDS20 KRNLDTYQKRLRFYWRPHCRGQTPGC
120 130 140
>>CCDS201.1 PLA2G2A gene_id:5320|Hs108|chr1 (144 aa)
initn: 469 init1: 455 opt: 462 Z-score: 571.6 bits: 111.6 E(32554): 1.6e-25
Smith-Waterman score: 462; 45.3% identity (70.8% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KB6 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGT
:: :: :: .. .. ..:.:.... ::. .:::.: .::::::.:: ::::.:::.:
CCDS20 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKR
: :: .:: :: :::..::. . :::. . . .:: :. .:: ::. . :. :
CCDS20 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
70 80 90 100 110 120
130
pF1KB6 NLRSYNPQYQYFPNILCS
: .:: .:::. : :
CCDS20 NKTTYNKKYQYYSNKHCRGSTPRC
130 140
>>CCDS200.1 PLA2G2E gene_id:30814|Hs108|chr1 (142 aa)
initn: 445 init1: 358 opt: 428 Z-score: 530.5 bits: 104.0 E(32554): 3.1e-23
Smith-Waterman score: 428; 45.7% identity (66.7% similar) in 129 aa overlap (10-138:9-136)
10 20 30 40 50 60
pF1KB6 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGT
:: : : :.:... ::::.:::.:: .:. :::::: :: : : :
CCDS20 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSAL-QYNDYGCYCGIGGSHWPVDQT
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 DWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKR
:::: ::: ::::::. ::. . ..: . . . : :. : ::.. . :..:
CCDS20 DWCCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRR
60 70 80 90 100 110
130
pF1KB6 NLRSYNPQYQYFPNILCS
:: .:: .: ..:: ::.
CCDS20 NLGTYNRKYAHYPNKLCTGPTPPC
120 130 140
>>CCDS204.2 PLA2G2F gene_id:64600|Hs108|chr1 (211 aa)
initn: 380 init1: 305 opt: 382 Z-score: 472.3 bits: 93.8 E(32554): 5.5e-20
Smith-Waterman score: 382; 37.9% identity (66.4% similar) in 140 aa overlap (1-137:44-181)
10 20 30
pF1KB6 MKGLLPLAWFLACSVPAVQGGLLDLKSMIE
:: .. .: . . . ...:.::.::.:.:
CCDS20 KKVLDRCFSGWRGPRFGASCPSRTSRSSLGMKKFFTVAILAGSVLSTAHGSLLNLKAMVE
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 KVTGKNALTNYGFYGCYCGWGGRGTPKDGTDWCCWAHDHCYGRLEEKGCNIRTQSYKYRF
:::..:. .. :::::: :::: ::: .:::: ::: :: .: ..::. .. : . .
CCDS20 AVTGRSAILSFVGYGCYCGLGGRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTI
80 90 100 110 120 130
100 110 120 130
pF1KB6 AWGV-VTCEP--GPFCHVNLCACDRKLVYCLKRNLRSYNPQYQYFPNILCS
.. ..: : . : ::...: :: ..: .:. : :. :
CCDS20 ENNTEIVCSDLNKTECDKQTCMCDKNMVLCLMN--QTYREEYRGFLNVYCQGPTPNCSIY
140 150 160 170 180 190
CCDS20 EPPPEEVTCSHQSPAPPAPP
200 210
>>CCDS10555.1 PLA2G10 gene_id:8399|Hs108|chr16 (165 aa)
initn: 315 init1: 230 opt: 344 Z-score: 427.8 bits: 85.2 E(32554): 1.7e-17
Smith-Waterman score: 344; 39.8% identity (65.3% similar) in 118 aa overlap (21-137:43-157)
10 20 30 40 50
pF1KB6 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGW
:.:.: . . : : . : :::.::
CCDS10 LLLLPSLLLLLLLPGPGSGEASRILRVHRRGILELAGTVGCV-GPRTPIAYMKYGCFCGL
20 30 40 50 60 70
60 70 80 90 100
pF1KB6 GGRGTPKDGTDWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPF-CHVNLCA
::.: :.:. :::: .:: :: : :: ::. .:. :... . : : :. :. ::
CCDS10 GGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAENKCQELLCK
80 90 100 110 120 130
110 120 130
pF1KB6 CDRKLVYCLKRNLRSYNPQYQYFPNILCS
::.... :: .. :: .: ..:..::
CCDS10 CDQEIANCLAQT--EYNLKYLFYPQFLCEPDSPKCD
140 150 160
>>CCDS9195.1 PLA2G1B gene_id:5319|Hs108|chr12 (148 aa)
initn: 209 init1: 181 opt: 262 Z-score: 329.2 bits: 66.8 E(32554): 5.2e-12
Smith-Waterman score: 262; 34.3% identity (62.2% similar) in 143 aa overlap (1-130:1-138)
10 20 30 40 50
pF1KB6 MKGLLPLAWFLACSVPAVQGGL-----LDLKSMIEKVT-GKNALTNYGFYGCYCGWGGRG
:: :: :: .: .: :...:. ....::. : :.. . .:. :::::: :: :
CCDS91 MK-LLVLAVLL--TVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSG
10 20 30 40 50
60 70 80 90 100
pF1KB6 TPKDGTDWCCWAHDHCYGRLEE-KGC-----NIRTQSYKYRFAWGVVTCEP-GPFCHVNL
:: : : :: .::.:: . .. .: : :..:.: . ...:: . :.. .
CCDS91 TPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFI
60 70 80 90 100 110
110 120 130
pF1KB6 CACDRKLVYCLKRNLRSYNPQYQYFPNILCS
: :::. . :... :: ..
CCDS91 CNCDRNAAICFSKA--PYNKAHKNLDTKKYCQS
120 130 140
138 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:41:38 2016 done: Fri Nov 4 23:41:38 2016
Total Scan time: 1.700 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]