FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6740, 142 aa
  1>>>pF1KB6740 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9471+/-0.000836; mu= 12.3097+/- 0.050
 mean_var=51.0031+/-10.081, 0's: 0 Z-trim(105.0): 12  B-trim: 152 in 1/49
 Lambda= 0.179587
 statistics sampled from 8170 (8178) to 8170 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.251), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS32852.1 TXNL4A gene_id:10907|Hs108|chr18       ( 142)  976 260.5 2.6e-70
CCDS82260.1 TXNL4A gene_id:10907|Hs108|chr18       (  71)  487 133.6 1.9e-32
CCDS10906.1 TXNL4B gene_id:54957|Hs108|chr16       ( 149)  379 105.8 9.8e-24


>>CCDS32852.1 TXNL4A gene_id:10907|Hs108|chr18            (142 aa)
 initn: 976 init1: 976 opt: 976  Z-score: 1375.8  bits: 260.5 E(32554): 2.6e-70
Smith-Waterman score: 976; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB6 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
               70        80        90       100       110       120

              130       140  
pF1KB6 RGARKGRGLVVSPKDYSTKYRY
       ::::::::::::::::::::::
CCDS32 RGARKGRGLVVSPKDYSTKYRY
              130       140  

>>CCDS82260.1 TXNL4A gene_id:10907|Hs108|chr18            (71 aa)
 initn: 487 init1: 487 opt: 487  Z-score: 695.9  bits: 133.6 E(32554): 1.9e-32
Smith-Waterman score: 487; 100.0% identity (100.0% similar) in 71 aa overlap (72-142:1-71)

              50        60        70        80        90       100 
pF1KB6 DEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNK
                                     ::::::::::::::::::::::::::::::
CCDS82                               MYELYDPCTVMFFFRNKHIMIDLGTGNNNK
                                             10        20        30

             110       120       130       140  
pF1KB6 INWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
       :::::::::::::::::::::::::::::::::::::::::
CCDS82 INWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
               40        50        60        70 

>>CCDS10906.1 TXNL4B gene_id:54957|Hs108|chr16            (149 aa)
 initn: 436 init1: 369 opt: 379  Z-score: 539.6  bits: 105.8 E(32554): 9.8e-24
Smith-Waterman score: 379; 37.8% identity (77.6% similar) in 143 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB6 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
       ::..::.: .  .::::: :  ..:.:.:::.: ::.:...:..: . .  ....:.:::
CCDS10 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
               10        20        30        40        50        60

               70         80        90       100       110         
pF1KB6 VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV
       ::. ..  ....... : : :: ::: ..:. .: :. ...:.  ... ::...:.::..
CCDS10 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI
               70        80         90       100       110         

     120       130       140         
pF1KB6 YRGARKGRGLVVSPKDYSTKYRY       
       :::: .:. .: :: : ..  .:       
CCDS10 YRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
     120       130       140         




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:31:43 2016 done: Fri Nov  4 15:31:43 2016
 Total Scan time:  1.530 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]