FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6743, 99 aa
  1>>>pF1KB6743 99 - 99 aa - 99 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5958+/-0.000584; mu= 12.6649+/- 0.035
 mean_var=52.5051+/-10.205, 0's: 0 Z-trim(111.1): 46  B-trim: 77 in 1/50
 Lambda= 0.177000
 statistics sampled from 12052 (12098) to 12052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.372), width:  16
 Scan time:  1.230

The best scores are:                                      opt bits E(32554)
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17          (  99)  657 174.7 8.4e-45
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17          (  99)  489 131.8 6.9e-32
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17          (  99)  482 130.0 2.4e-31
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17         (  97)  462 124.9 8.1e-30
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17         (  98)  449 121.5 8.1e-29
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17      (  93)  237 67.4 1.5e-12
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17          (  92)  234 66.6 2.6e-12
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17          (  92)  214 61.5   9e-11


>>CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17               (99 aa)
 initn: 657 init1: 657 opt: 657  Z-score: 917.8  bits: 174.7 E(32554): 8.4e-45
Smith-Waterman score: 657; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
               10        20        30        40        50        60

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       :::::::::::::::::::::::::::::::::::::::
CCDS11 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
               70        80        90         

>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17               (99 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 685.9  bits: 131.8 E(32554): 6.9e-32
Smith-Waterman score: 489; 74.5% identity (84.7% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       ::.::::::::: ::.: ::::::: .::. .:::: : :.::  ::: :::: :::.::
CCDS11 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCP
               10        20        30        40        50        60

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       .::::::: . ::::::: :::::: : ::::.::::: 
CCDS11 REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
               70        80        90         

>>CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17               (99 aa)
 initn: 501 init1: 478 opt: 482  Z-score: 676.3  bits: 130.0 E(32554): 2.4e-31
Smith-Waterman score: 482; 69.4% identity (85.7% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       ::::::::::::.:::: ::::::::... :.:::.:  :::: .::: :: :::. .::
CCDS11 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCP
               10        20        30        40        50        60

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       ::::::::  .::.:::::..::.::: :::.  :. : 
CCDS11 KEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
               70        80        90         

>>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17              (97 aa)
 initn: 370 init1: 358 opt: 462  Z-score: 648.8  bits: 124.9 E(32554): 8.1e-30
Smith-Waterman score: 462; 70.4% identity (88.8% similar) in 98 aa overlap (1-98:1-96)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       :::::::: ::::::.: ::::: : ..  :.:::.:..:::: .::: :::::::.:::
CCDS11 MKVSAALLWLLLIAAAFSPQGLAGPASV--PTTCCFNLANRKIPLQRLESYRRITSGKCP
               10        20          30        40        50        

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       ..:::::: .::.::::::.::::::: .::... ::: 
CCDS11 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
       60        70        80        90       

>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17              (98 aa)
 initn: 267 init1: 259 opt: 449  Z-score: 630.8  bits: 121.5 E(32554): 8.1e-29
Smith-Waterman score: 449; 64.6% identity (89.9% similar) in 99 aa overlap (1-99:1-98)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       :::::.::::::..:.: :::::::::.:.: :::..:...:::.::: ::  ::.:.::
CCDS11 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
               10        20        30        40        50          

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       ..::::.: ..::::::::.::::. : :: ....: ::
CCDS11 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
      60        70        80        90        

>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17           (93 aa)
 initn: 255 init1: 128 opt: 237  Z-score: 338.6  bits: 67.4 E(32554): 1.5e-12
Smith-Waterman score: 237; 39.6% identity (74.7% similar) in 91 aa overlap (1-91:1-90)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       :.::.: : .:: . ..  : :. : : ..:..::...:.:.:  . .:.: . :::.: 
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFE-TSSQCS
               10        20        30        40        50          

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       : .::: :  ....::::...:::  .. :.        
CCDS32 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA     
      60        70        80        90        

>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17               (92 aa)
 initn: 237 init1: 128 opt: 234  Z-score: 334.5  bits: 66.6 E(32554): 2.6e-12
Smith-Waterman score: 234; 36.3% identity (74.7% similar) in 91 aa overlap (1-91:1-90)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       ::. ...: ::...:.:   .:. : . . :..::...: ::.  . ...: . ::: : 
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYE-TSSLCS
               10        20        30        40        50          

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       . ::.:.:  .:..::::...:::. .  :.        
CCDS11 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN      
      60        70        80        90        

>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17               (92 aa)
 initn: 208 init1: 128 opt: 214  Z-score: 306.9  bits: 61.5 E(32554): 9e-11
Smith-Waterman score: 214; 37.4% identity (73.6% similar) in 91 aa overlap (1-91:1-89)

               10        20        30        40        50        60
pF1KB6 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
       :.::.: : .:: . ..  : ..   : ..:..::...:.:.:  . .:.: . :::.: 
CCDS11 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFE-TSSQCS
               10        20         30        40        50         

               70        80        90         
pF1KB6 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
       : .::: :  ....::::...:::  .. :.        
CCDS11 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA     
       60        70        80        90       




99 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:45:46 2016 done: Fri Nov  4 23:45:46 2016
 Total Scan time:  1.230 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]