FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6746, 144 aa
  1>>>pF1KB6746 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9002+/-0.00032; mu= 13.6438+/- 0.020
 mean_var=58.2490+/-11.714, 0's: 0 Z-trim(114.7): 27  B-trim: 1053 in 1/53
 Lambda= 0.168047
 statistics sampled from 24644 (24664) to 24644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.289), width:  16
 Scan time:  4.350

The best scores are:                                      opt bits E(85289)
NP_003126 (OMIM: 182175) signal recognition partic ( 144)  951 238.3 3.2e-63
NP_001191128 (OMIM: 182175) signal recognition par ( 101)  680 172.5 1.4e-43
NP_001191122 (OMIM: 182175) signal recognition par ( 110)  677 171.8 2.6e-43
NP_001191123 (OMIM: 182175) signal recognition par ( 120)  537 137.9 4.6e-33


>>NP_003126 (OMIM: 182175) signal recognition particle 1  (144 aa)
 initn: 951 init1: 951 opt: 951  Z-score: 1255.9  bits: 238.3 E(85289): 3.2e-63
Smith-Waterman score: 951; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB6 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
               70        80        90       100       110       120

              130       140    
pF1KB6 KTGGADQSLQQGEGSKKGKGKKKK
       ::::::::::::::::::::::::
NP_003 KTGGADQSLQQGEGSKKGKGKKKK
              130       140    

>>NP_001191128 (OMIM: 182175) signal recognition particl  (101 aa)
 initn: 680 init1: 680 opt: 680  Z-score: 903.1  bits: 172.5 E(85289): 1.4e-43
Smith-Waterman score: 680; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB6 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
       :::::::::::::::::::::::::::::::::::::::::                   
NP_001 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSR                   
               70        80        90       100                    

              130       140    
pF1KB6 KTGGADQSLQQGEGSKKGKGKKKK

>>NP_001191122 (OMIM: 182175) signal recognition particl  (110 aa)
 initn: 677 init1: 677 opt: 677  Z-score: 898.7  bits: 171.8 E(85289): 2.6e-43
Smith-Waterman score: 677; 95.3% identity (98.1% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KB6 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
       ::::::::::::::::::::::::::::::::::::::::. .. :              
NP_001 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSHYTLSLTSGS          
               70        80        90       100       110          

              130       140    
pF1KB6 KTGGADQSLQQGEGSKKGKGKKKK

>>NP_001191123 (OMIM: 182175) signal recognition particl  (120 aa)
 initn: 537 init1: 537 opt: 537  Z-score: 714.7  bits: 137.9 E(85289): 4.6e-33
Smith-Waterman score: 742; 83.3% identity (83.3% similar) in 144 aa overlap (1-144:1-120)

               10        20        30        40        50        60
pF1KB6 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
       :::::::::::::::::::::::::::::::::::::::                     
NP_001 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISK---------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB6 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---KNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
         40        50        60        70        80        90      

              130       140    
pF1KB6 KTGGADQSLQQGEGSKKGKGKKKK
       ::::::::::::::::::::::::
NP_001 KTGGADQSLQQGEGSKKGKGKKKK
        100       110       120




144 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:08:24 2016 done: Sat Nov  5 20:08:24 2016
 Total Scan time:  4.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]