FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6747, 102 aa
  1>>>pF1KB6747 102 - 102 aa - 102 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0339+/-0.000752; mu= 10.3539+/- 0.045
 mean_var=59.5373+/-11.401, 0's: 0 Z-trim(107.7): 19  B-trim: 0 in 0/49
 Lambda= 0.166219
 statistics sampled from 9712 (9725) to 9712 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.299), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(32554)
CCDS2619.1 LSM3 gene_id:27258|Hs108|chr3           ( 102)  656 165.2 6.5e-42


>>CCDS2619.1 LSM3 gene_id:27258|Hs108|chr3                (102 aa)
 initn: 656 init1: 656 opt: 656  Z-score: 866.0  bits: 165.2 E(32554): 6.5e-42
Smith-Waterman score: 656; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB6 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
               10        20        30        40        50        60

               70        80        90       100  
pF1KB6 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
       ::::::::::::::::::::::::::::::::::::::::::
CCDS26 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
               70        80        90       100  




102 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:47:07 2016 done: Fri Nov  4 23:47:08 2016
 Total Scan time:  1.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]