FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6747, 102 aa
  1>>>pF1KB6747 102 - 102 aa - 102 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2672+/-0.000334; mu= 9.1496+/- 0.021
 mean_var=60.5355+/-11.554, 0's: 0 Z-trim(114.7): 18  B-trim: 0 in 0/49
 Lambda= 0.164842
 statistics sampled from 24741 (24756) to 24741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.29), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(85289)
NP_055278 (OMIM: 607283) U6 snRNA-associated Sm-li ( 102)  656 164.0 3.8e-41
NP_808210 (OMIM: 601061) small nuclear ribonucleop ( 108)  154 44.6 3.5e-05
NP_004588 (OMIM: 601061) small nuclear ribonucleop ( 118)  154 44.6 3.7e-05
NP_036454 (OMIM: 607285) U6 snRNA-associated Sm-li (  91)  137 40.6 0.00049


>>NP_055278 (OMIM: 607283) U6 snRNA-associated Sm-like p  (102 aa)
 initn: 656 init1: 656 opt: 656  Z-score: 859.7  bits: 164.0 E(85289): 3.8e-41
Smith-Waterman score: 656; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB6 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
               10        20        30        40        50        60

               70        80        90       100  
pF1KB6 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
       ::::::::::::::::::::::::::::::::::::::::::
NP_055 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
               70        80        90       100  

>>NP_808210 (OMIM: 601061) small nuclear ribonucleoprote  (108 aa)
 initn: 141 init1: 109 opt: 154  Z-score: 214.1  bits: 44.6 E(85289): 3.5e-05
Smith-Waterman score: 154; 32.2% identity (66.7% similar) in 90 aa overlap (17-102:18-107)

                10        20          30        40        50       
pF1KB6  MADDVDQQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDV
                        ::...  :.  . .. .. ::...: ::..:.:.: ::.: .:
NP_808 MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV
               10        20        30        40        50        60

        60        70         80        90        100   
pF1KB6 EETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLVA-PPLRVG 
       .:  : .  . .  ..    .: : :  .:.:::.:..:   :: .: 
NP_808 KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
               70        80        90       100        

>>NP_004588 (OMIM: 601061) small nuclear ribonucleoprote  (118 aa)
 initn: 133 init1: 109 opt: 154  Z-score: 213.5  bits: 44.6 E(85289): 3.7e-05
Smith-Waterman score: 154; 32.2% identity (66.7% similar) in 90 aa overlap (17-102:28-117)

                          10        20          30        40       
pF1KB6            MADDVDQQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYD
                                  ::...  :.  . .. .. ::...: ::..:.:
NP_004 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
               10        20        30        40        50        60

        50        60        70         80        90        100   
pF1KB6 QHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLVA-PPLRVG 
       .: ::.: .:.:  : .  . .  ..    .: : :  .:.:::.:..:   :: .: 
NP_004 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
               70        80        90       100       110        

>>NP_036454 (OMIM: 607285) U6 snRNA-associated Sm-like p  (91 aa)
 initn: 125 init1: 125 opt: 137  Z-score: 193.4  bits: 40.6 E(85289): 0.00049
Smith-Waterman score: 137; 34.9% identity (57.8% similar) in 83 aa overlap (10-91:6-88)

               10         20        30        40        50         
pF1KB6 MADDVDQQQTTNTVEE-PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE
                :::  .  ::.:.   .  ::.. :..:.:. : : ..:. .::.: :: :
NP_036     MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE
                   10        20        30        40        50      

      60        70        80        90       100  
pF1KB6 TVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
          : :  . :  .    .  :: ::   :.:           
NP_036 FEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV        
         60        70        80        90         




102 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:47:08 2016 done: Fri Nov  4 23:47:08 2016
 Total Scan time:  3.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]