FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6752, 145 aa
  1>>>pF1KB6752 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0834+/-0.000647; mu= 13.8911+/- 0.039
 mean_var=68.7195+/-13.560, 0's: 0 Z-trim(111.3): 7  B-trim: 151 in 1/52
 Lambda= 0.154716
 statistics sampled from 12261 (12263) to 12261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.377), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS12067.1 RPS15 gene_id:6209|Hs108|chr19         ( 145)  957 221.5 1.5e-58
CCDS77210.1 RPS15 gene_id:6209|Hs108|chr19         ( 152)  953 220.6 2.8e-58


>>CCDS12067.1 RPS15 gene_id:6209|Hs108|chr19              (145 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 1164.8  bits: 221.5 E(32554): 1.5e-58
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB6 MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFS
               70        80        90       100       110       120

              130       140     
pF1KB6 ITYKPVKHGRPGIGATHSSRFIPLK
       :::::::::::::::::::::::::
CCDS12 ITYKPVKHGRPGIGATHSSRFIPLK
              130       140     

>>CCDS77210.1 RPS15 gene_id:6209|Hs108|chr19              (152 aa)
 initn: 953 init1: 953 opt: 953  Z-score: 1159.7  bits: 220.6 E(32554): 2.8e-58
Smith-Waterman score: 953; 99.3% identity (100.0% similar) in 145 aa overlap (1-145:8-152)

                      10        20        30        40        50   
pF1KB6        MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQ
              .::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MLGRGADLAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQ
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB6 HSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 HSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIG
               70        80        90       100       110       120

           120       130       140     
pF1KB6 HYLGEFSITYKPVKHGRPGIGATHSSRFIPLK
       ::::::::::::::::::::::::::::::::
CCDS77 HYLGEFSITYKPVKHGRPGIGATHSSRFIPLK
              130       140       150  




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:57:06 2016 done: Sat Nov  5 13:57:06 2016
 Total Scan time:  1.710 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]