FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6754, 146 aa
  1>>>pF1KB6754 146 - 146 aa - 146 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3578+/-0.000324; mu= 10.7848+/- 0.020
 mean_var=59.5713+/-11.627, 0's: 0 Z-trim(115.8): 6  B-trim: 0 in 0/52
 Lambda= 0.166171
 statistics sampled from 26467 (26471) to 26467 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.31), width:  16
 Scan time:  4.890

The best scores are:                                      opt bits E(85289)
NP_002361 (OMIM: 602603) protein mago nashi homolo ( 146)  981 243.1 1.2e-64


>>NP_002361 (OMIM: 602603) protein mago nashi homolog [H  (146 aa)
 initn: 981 init1: 981 opt: 981  Z-score: 1281.6  bits: 243.1 E(85289): 1.2e-64
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB6 MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLR
               70        80        90       100       110       120

              130       140      
pF1KB6 VFYYLVQDLKCLVFSLIGLHFKIKPI
       ::::::::::::::::::::::::::
NP_002 VFYYLVQDLKCLVFSLIGLHFKIKPI
              130       140      




146 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:55:32 2016 done: Sat Nov  5 07:55:32 2016
 Total Scan time:  4.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]