FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6755, 105 aa
  1>>>pF1KB6755 105 - 105 aa - 105 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6295+/-0.000258; mu= 12.8135+/- 0.016
 mean_var=49.5249+/-10.089, 0's: 0 Z-trim(119.0): 3  B-trim: 0 in 0/56
 Lambda= 0.182248
 statistics sampled from 32589 (32592) to 32589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.382), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(85289)
NP_004536 (OMIM: 603837) NADH dehydrogenase [ubiqu ( 105)  733 199.3 9.2e-52


>>NP_004536 (OMIM: 603837) NADH dehydrogenase [ubiquinon  (105 aa)
 initn: 733 init1: 733 opt: 733  Z-score: 1050.3  bits: 199.3 E(85289): 9.2e-52
Smith-Waterman score: 733; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KB6 MICWRHPSAPCGRGEWQVPRSQLPLARVEFPVALGLGVAVGAEAAAIMVNLLQIVRDHWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MICWRHPSAPCGRGEWQVPRSQLPLARVEFPVALGLGVAVGAEAAAIMVNLLQIVRDHWV
               10        20        30        40        50        60

               70        80        90       100     
pF1KB6 HVLVPMGFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVTWK
       :::::::::::::::::::::::::::::::::::::::::::::
NP_004 HVLVPMGFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVTWK
               70        80        90       100     




105 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:49:29 2016 done: Fri Nov  4 23:49:30 2016
 Total Scan time:  3.700 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]