FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6756, 146 aa
  1>>>pF1KB6756 146 - 146 aa - 146 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8143+/-0.000541; mu= 14.8202+/- 0.033
 mean_var=57.8407+/-11.532, 0's: 0 Z-trim(113.5): 3  B-trim: 200 in 1/50
 Lambda= 0.168639
 statistics sampled from 14140 (14141) to 14140 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.434), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS4157.1 IL13 gene_id:3596|Hs108|chr5            ( 146)  955 239.3 6.3e-64


>>CCDS4157.1 IL13 gene_id:3596|Hs108|chr5                 (146 aa)
 initn: 955 init1: 955 opt: 955  Z-score: 1261.2  bits: 239.3 E(32554): 6.3e-64
Smith-Waterman score: 955; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB6 MHPLLNPLLLALGLMALLLTTVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MHPLLNPLLLALGLMALLLTTVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LCNGSMVWSINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LCNGSMVWSINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRD
               70        80        90       100       110       120

              130       140      
pF1KB6 TKIEVAQFVKDLLLHLKKLFREGQFN
       ::::::::::::::::::::::::::
CCDS41 TKIEVAQFVKDLLLHLKKLFREGQFN
              130       140      




146 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:50:35 2016 done: Fri Nov  4 23:50:35 2016
 Total Scan time:  1.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]