FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6756, 146 aa
  1>>>pF1KB6756 146 - 146 aa - 146 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5408+/-0.000268; mu= 16.3587+/- 0.017
 mean_var=58.0271+/-11.601, 0's: 0 Z-trim(120.1): 3  B-trim: 0 in 0/56
 Lambda= 0.168368
 statistics sampled from 34820 (34822) to 34820 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.408), width:  16
 Scan time:  3.950

The best scores are:                                      opt bits E(85289)
NP_002179 (OMIM: 147683,600807,607154) interleukin ( 146)  955 239.0   2e-63


>>NP_002179 (OMIM: 147683,600807,607154) interleukin-13   (146 aa)
 initn: 955 init1: 955 opt: 955  Z-score: 1259.5  bits: 239.0 E(85289): 2e-63
Smith-Waterman score: 955; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB6 MHPLLNPLLLALGLMALLLTTVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MHPLLNPLLLALGLMALLLTTVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LCNGSMVWSINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LCNGSMVWSINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRD
               70        80        90       100       110       120

              130       140      
pF1KB6 TKIEVAQFVKDLLLHLKKLFREGQFN
       ::::::::::::::::::::::::::
NP_002 TKIEVAQFVKDLLLHLKKLFREGQFN
              130       140      




146 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:50:36 2016 done: Fri Nov  4 23:50:36 2016
 Total Scan time:  3.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]