FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6757, 106 aa
  1>>>pF1KB6757 106 - 106 aa - 106 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0902+/-0.000548; mu= 11.5527+/- 0.033
 mean_var=62.5328+/-12.160, 0's: 0 Z-trim(113.3): 9  B-trim: 0 in 0/54
 Lambda= 0.162189
 statistics sampled from 13923 (13928) to 13923 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.428), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS9802.1 COX16 gene_id:51241|Hs108|chr14         ( 106)  708 172.9 3.2e-44
CCDS73648.1 COX16 gene_id:100529257|Hs108|chr14    ( 182)  557 137.7 2.2e-33


>>CCDS9802.1 COX16 gene_id:51241|Hs108|chr14              (106 aa)
 initn: 708 init1: 708 opt: 708  Z-score: 907.3  bits: 172.9 E(32554): 3.2e-44
Smith-Waterman score: 708; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KB6 MFAPAVMRAFRKNKTLGYGVPMLLLIVGGSFGLREFSQIRYDAVKSKMDPELEKKLKENK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MFAPAVMRAFRKNKTLGYGVPMLLLIVGGSFGLREFSQIRYDAVKSKMDPELEKKLKENK
               10        20        30        40        50        60

               70        80        90       100      
pF1KB6 ISLESEYEKIKDSKFDDWKNIRGPRPWEDPDLLQGRNPESLKTKTT
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ISLESEYEKIKDSKFDDWKNIRGPRPWEDPDLLQGRNPESLKTKTT
               70        80        90       100      

>>CCDS73648.1 COX16 gene_id:100529257|Hs108|chr14         (182 aa)
 initn: 554 init1: 554 opt: 557  Z-score: 712.9  bits: 137.7 E(32554): 2.2e-33
Smith-Waterman score: 557; 88.7% identity (92.8% similar) in 97 aa overlap (14-106:86-182)

                                10        20            30         
pF1KB6                  MFAPAVMRAFRKNKTLGYGVPML----LLIVGGSFGLREFSQI
                                     .. ::.: .     ::::::::::::::::
CCDS73 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLLIVGGSFGLREFSQI
          60        70        80        90       100       110     

      40        50        60        70        80        90         
pF1KB6 RYDAVKSKMDPELEKKLKENKISLESEYEKIKDSKFDDWKNIRGPRPWEDPDLLQGRNPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RYDAVKSKMDPELEKKLKENKISLESEYEKIKDSKFDDWKNIRGPRPWEDPDLLQGRNPE
         120       130       140       150       160       170     

     100      
pF1KB6 SLKTKTT
       :::::::
CCDS73 SLKTKTT
         180  




106 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:23:19 2016 done: Fri Nov  4 15:23:19 2016
 Total Scan time:  1.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]