Result of FASTA (ccds) for
pF1KB6761
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6761, 109 aa
1>>>pF1KB6761 109 - 109 aa - 109 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5391+/-0.000522; mu= 14.0390+/- 0.031
mean_var=56.4572+/-10.859, 0's: 0 Z-trim(113.8): 50 B-trim: 7 in 1/51
Lambda= 0.170693
statistics sampled from 14340 (14390) to 14340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.442), width: 16
Scan time: 1.630
The best scores are: opt bits E(32554)
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 ( 99) 666 170.8 1.3e-43
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 ( 99) 489 127.2 1.8e-30
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 ( 97) 449 117.4 1.6e-27
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 ( 99) 443 115.9 4.5e-27
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 ( 98) 422 110.7 1.6e-25
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 259 70.6 1.9e-13
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 248 67.9 1.2e-12
CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 ( 119) 231 63.8 2.7e-11
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 225 62.2 6.1e-11
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 225 62.2 6.2e-11
>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 (99 aa)
initn: 666 init1: 666 opt: 666 Z-score: 896.3 bits: 170.8 E(32554): 1.3e-43
Smith-Waterman score: 666; 100.0% identity (100.0% similar) in 99 aa overlap (11-109:1-99)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
10 20 30 40 50
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
60 70 80 90
>>CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 (99 aa)
initn: 489 init1: 489 opt: 489 Z-score: 660.7 bits: 127.2 E(32554): 1.8e-30
Smith-Waterman score: 489; 74.5% identity (84.7% similar) in 98 aa overlap (11-108:1-98)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
::.::::::::: ::.: ::::::: .::. .:::: : :.:: ::: :
CCDS11 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLAS
10 20 30 40 50
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
::: :::.::.::::::: . ::::::: :::::: : ::::.:::::
CCDS11 YRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
60 70 80 90
>>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 (97 aa)
initn: 356 init1: 342 opt: 449 Z-score: 607.6 bits: 117.4 E(32554): 1.6e-27
Smith-Waterman score: 449; 69.4% identity (85.7% similar) in 98 aa overlap (11-108:1-96)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
::.::::: ::: :::::::::: :... ::::. . :.::: :::::
CCDS11 MKVSAALLWLLLIAAAFSPQGLAGPASV--PTTCCFNLANRKIPLQRLES
10 20 30 40
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
::: ::..::..:::::::: :.::::: .::::: ::.::.:. :::
CCDS11 YRRITSGKCPQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
50 60 70 80 90
>>CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 (99 aa)
initn: 459 init1: 439 opt: 443 Z-score: 599.5 bits: 115.9 E(32554): 4.5e-27
Smith-Waterman score: 443; 65.3% identity (81.6% similar) in 98 aa overlap (11-108:1-98)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
::.::::::::: ::.::::::::: ... :::. ::.::: :::::
CCDS11 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLES
10 20 30 40 50
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
: : :. .::.:::::::: ::.:::: ..::.: :::::. :. :
CCDS11 YTRITNIQCPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
60 70 80 90
>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 (98 aa)
initn: 420 init1: 231 opt: 422 Z-score: 571.6 bits: 110.7 E(32554): 1.6e-25
Smith-Waterman score: 422; 64.3% identity (85.7% similar) in 98 aa overlap (11-108:1-97)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
::.::.:::::: .:::.::::::: ..:. .:::. : .::: :::.:
CCDS11 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKS
10 20 30 40 50
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
: ::: .::..::::.::: ::::::: .::::..:::: .:..: :
CCDS11 YVITTS-RCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
60 70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 283 init1: 146 opt: 259 Z-score: 355.1 bits: 70.6 E(32554): 1.9e-13
Smith-Waterman score: 259; 38.5% identity (73.6% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
:: ...: ::. .::: .:. :.: . :.::. . .:.:.. . .
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVD
10 20 30 40 50
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
: .: :: : . ::.:.:: .:..::::...:::... :.
CCDS11 YYET-SSLCSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 229 init1: 140 opt: 248 Z-score: 340.4 bits: 67.9 E(32554): 1.2e-12
Smith-Waterman score: 248; 37.4% identity (74.7% similar) in 91 aa overlap (11-101:1-90)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
:..:.: : .:: . :. : :. :.. .: :.::. . ...::.. . .
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIAD
10 20 30 40 50
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
: .: ::.: . .::: :: ...::::...::: ... :.
CCDS32 YFET-SSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 (119 aa)
initn: 258 init1: 222 opt: 231 Z-score: 316.2 bits: 63.8 E(32554): 2.7e-11
Smith-Waterman score: 231; 36.0% identity (65.0% similar) in 100 aa overlap (11-108:5-99)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
: ..:: : . : . : : .. . ::. :..:.::..:. :
CCDS34 MAGLMTIVTSLLFLGVCAHHIIPTG-----SVVIPSPCCMFFVSKRIPENRVVS
10 20 30 40
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQ--TPKL
:. .. : : . .::: :: ...:.:: :.::: .::.:: : . .:.
CCDS34 YQLSSRSTCLKAGVIFTTKKGQQFCGDPKQEWVQRYMKNLDAKQKKASPRARAVAVKGPV
50 60 70 80 90 100
CCDS34 QRYPGNQTTC
110
>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 (91 aa)
initn: 231 init1: 127 opt: 225 Z-score: 309.9 bits: 62.2 E(32554): 6.1e-11
Smith-Waterman score: 225; 35.2% identity (71.4% similar) in 91 aa overlap (11-101:1-89)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
::.::: : ..: :.:. . :.: . .: : ::. .: . .:. ...
CCDS11 MKVSAAALAVILIATALCAPASASPYSSDT-TPCCFAYIARPLPRAHIKE
10 20 30 40
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
: : :..: ::.: :. ....::.: .:::..... :.
CCDS11 YFYT-SGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
50 60 70 80 90
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 221 init1: 140 opt: 225 Z-score: 309.8 bits: 62.2 E(32554): 6.2e-11
Smith-Waterman score: 225; 35.2% identity (74.7% similar) in 91 aa overlap (11-101:1-89)
10 20 30 40 50 60
pF1KB6 MWKPMPSPSNMKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLES
:..:.: : .:: . :. : .. .. .: :.::. . ...::.. . .
CCDS11 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIAD
10 20 30 40
70 80 90 100
pF1KB6 YRRTTSSHCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
: .: ::.: . .::: :: ....::::...::: ... :.
CCDS11 YFET-SSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
50 60 70 80 90
109 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:26:52 2016 done: Sat Nov 5 20:26:52 2016
Total Scan time: 1.630 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]