Result of FASTA (ccds) for
pF1KB6763
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6763, 113 aa
1>>>pF1KB6763 113 - 113 aa - 113 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7432+/-0.000599; mu= 13.1875+/- 0.036
mean_var=58.1314+/-11.190, 0's: 0 Z-trim(111.7): 39 B-trim: 8 in 1/50
Lambda= 0.168217
statistics sampled from 12522 (12562) to 12522 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.386), width: 16
Scan time: 1.600
The best scores are: opt bits E(32554)
CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17 ( 113) 754 190.2 2.3e-49
CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 ( 120) 541 138.5 8.9e-34
CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 ( 137) 312 83.0 5.3e-17
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 269 72.5 6.1e-14
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 243 66.1 4.3e-12
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 235 64.2 1.6e-11
>>CCDS11304.1 CCL15 gene_id:6359|Hs108|chr17 (113 aa)
initn: 754 init1: 754 opt: 754 Z-score: 999.6 bits: 190.2 E(32554): 2.3e-49
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 SIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
70 80 90 100 110
>>CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 (120 aa)
initn: 541 init1: 308 opt: 541 Z-score: 719.9 bits: 138.5 E(32554): 8.9e-34
Smith-Waterman score: 541; 74.5% identity (88.2% similar) in 110 aa overlap (1-109:1-110)
10 20 30 40 50
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFH-FAADCCTSYIS
::::::::::::::..:::::. :.:::::.:::::::::::.:. :: .:::: ::
CCDS59 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDRFHATSADCCISYTP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 QSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
.::::::..:::::.::::::::::::::::. ::.:: :: ::. ::
CCDS59 RSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQVCMRMLKLDTRIKTRKN
70 80 90 100 110 120
>>CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 (137 aa)
initn: 524 init1: 308 opt: 312 Z-score: 418.7 bits: 83.0 E(32554): 5.3e-17
Smith-Waterman score: 498; 64.6% identity (77.2% similar) in 127 aa overlap (1-109:1-127)
10 20 30 40
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLN---------------
::::::::::::::..:::::. :.:::::.:::::::::::.:.
CCDS11 MKVSVAALSCLMLVTALGSQARVTKDAETEFMMSKLPLENPVLLDMLWRRKIGPQMTLSH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 --SFH-FAADCCTSYISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQ
.:: .:::: :: .::::::..:::::.::::::::::::::::. ::.:: ::
CCDS11 AAGFHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRRFCANPSDKQVQ
70 80 90 100 110 120
110
pF1KB6 DCMKKLKPYSI
::. ::
CCDS11 VCMRMLKLDTRIKTRKN
130
>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 (109 aa)
initn: 267 init1: 216 opt: 269 Z-score: 363.8 bits: 72.5 E(32554): 6.1e-14
Smith-Waterman score: 269; 36.4% identity (75.5% similar) in 110 aa overlap (1-109:1-107)
10 20 30 40 50
pF1KB6 MKVSVAALSCLMLVAV-LGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYIS
::.::::. ..:... ::.... .... . . :. :. .: . .: ..:: .: .
CCDS45 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLK--LVGGPYH-PSECCFTYTT
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 QSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
.:: . . .:.::.:.:::::..:.::.:..::..:: ::: .: .:
CCDS45 YKIPRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
60 70 80 90 100
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 280 init1: 233 opt: 243 Z-score: 330.6 bits: 66.1 E(32554): 4.3e-12
Smith-Waterman score: 243; 48.3% identity (69.0% similar) in 87 aa overlap (27-109:6-90)
10 20 30 40 50
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAAD----CCTS
: ... . : : :. : .::: :: :
CCDS32 MQVSTAALAVLLCTMALCNQVL--SAPLAADTPTACCFS
10 20 30
60 70 80 90 100 110
pF1KB6 YISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
: :..:: ... .::::::.::::.::::::.:::::: :: :: .. :.
CCDS32 YTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
40 50 60 70 80 90
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 275 init1: 233 opt: 235 Z-score: 320.2 bits: 64.2 E(32554): 1.6e-11
Smith-Waterman score: 237; 42.2% identity (66.1% similar) in 109 aa overlap (1-109:1-89)
10 20 30 40 50 60
pF1KB6 MKVSVAALSCLMLVAVLGSQAQFTNDAETELMMSKLPLENPVVLNSFHFAADCCTSYISQ
:.::.:::. :. . .: .: :. ..: ..:.. :: :: :.
CCDS11 MQVSTAALAVLLCTMALCNQ--FS---------ASLAADTPTA---------CCFSYTSR
10 20 30 40
70 80 90 100 110
pF1KB6 SIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKLKPYSI
.:: ... .::::::.:::::::::::..::::: :: :: .. :.
CCDS11 QIPQNFIADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
50 60 70 80 90
113 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:51:08 2016 done: Fri Nov 4 23:51:08 2016
Total Scan time: 1.600 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]