FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6766, 148 aa
  1>>>pF1KB6766 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6416+/-0.000526; mu= 11.1805+/- 0.032
 mean_var=76.0026+/-14.891, 0's: 0 Z-trim(115.3): 10  B-trim: 0 in 0/54
 Lambda= 0.147116
 statistics sampled from 15827 (15833) to 15827 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.486), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS11971.1 GRP gene_id:2922|Hs108|chr18           ( 148) 1004 221.0 2.1e-58
CCDS45877.1 GRP gene_id:2922|Hs108|chr18           ( 141)  935 206.4 5.1e-54
CCDS45878.1 GRP gene_id:2922|Hs108|chr18           ( 138)  824 182.8 6.2e-47


>>CCDS11971.1 GRP gene_id:2922|Hs108|chr18                (148 aa)
 initn: 1004 init1: 1004 opt: 1004  Z-score: 1162.1  bits: 221.0 E(32554): 2.1e-58
Smith-Waterman score: 1004; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB6 MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFK
               70        80        90       100       110       120

              130       140        
pF1KB6 DVGSKGKVGRLSAPGSQREGRNPQLNQQ
       ::::::::::::::::::::::::::::
CCDS11 DVGSKGKVGRLSAPGSQREGRNPQLNQQ
              130       140        

>>CCDS45877.1 GRP gene_id:2922|Hs108|chr18                (141 aa)
 initn: 945 init1: 861 opt: 935  Z-score: 1083.3  bits: 206.4 E(32554): 5.1e-54
Smith-Waterman score: 935; 95.3% identity (95.3% similar) in 148 aa overlap (1-148:1-141)

               10        20        30        40        50        60
pF1KB6 MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFK
               70        80        90       100       110       120

              130       140        
pF1KB6 DVGSKGKVGRLSAPGSQREGRNPQLNQQ
       :::::::       ::::::::::::::
CCDS45 DVGSKGK-------GSQREGRNPQLNQQ
                     130       140 

>>CCDS45878.1 GRP gene_id:2922|Hs108|chr18                (138 aa)
 initn: 859 init1: 824 opt: 824  Z-score: 956.1  bits: 182.8 E(32554): 6.2e-47
Smith-Waterman score: 824; 99.2% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB6 MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFK
               70        80        90       100       110       120

              130       140        
pF1KB6 DVGSKGKVGRLSAPGSQREGRNPQLNQQ
       :.                          
CCDS45 DLVDSLLQVLNVKEGTPS          
              130                  




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:17:32 2016 done: Fri Nov  4 15:17:32 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]