FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6771, 118 aa
  1>>>pF1KB6771 118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2065+/-0.000542; mu= 9.9845+/- 0.033
 mean_var=112.8056+/-22.164, 0's: 0 Z-trim(117.8): 16  B-trim: 0 in 0/56
 Lambda= 0.120756
 statistics sampled from 18569 (18585) to 18569 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.852), E-opt: 0.2 (0.571), width:  16
 Scan time:  1.430

The best scores are:                                      opt bits E(32554)
CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17         ( 118)  765 141.8 9.5e-35
CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17         ( 116)  743 137.9 1.3e-33
CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12         ( 118)  608 114.4 1.6e-26
CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12         ( 116)  586 110.6 2.3e-25
CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12         ( 116)  586 110.6 2.3e-25
CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12         ( 117)  586 110.6 2.3e-25
CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1             ( 100)  461 88.8 7.3e-19


>>CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17              (118 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 737.4  bits: 141.8 E(32554): 9.5e-35
Smith-Waterman score: 765; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
               70        80        90       100       110        

>>CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17              (116 aa)
 initn: 743 init1: 743 opt: 743  Z-score: 716.7  bits: 137.9 E(32554): 1.3e-33
Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 115 aa overlap (4-118:2-116)

               10        20        30        40        50        60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32   MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
                 10        20        30        40        50        

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
       60        70        80        90       100       110      

>>CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12              (118 aa)
 initn: 628 init1: 597 opt: 608  Z-score: 589.5  bits: 114.4 E(32554): 1.6e-26
Smith-Waterman score: 608; 77.8% identity (90.6% similar) in 117 aa overlap (6-118:2-118)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
CCDS41     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..::
CCDS41 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYF
         60        70        80        90       100       110      

         
pF1KB6 ST
        :
CCDS41 FT
         

>>CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12              (116 aa)
 initn: 606 init1: 575 opt: 586  Z-score: 568.9  bits: 110.6 E(32554): 2.3e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
CCDS44     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.   
CCDS44 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD
         60        70        80        90       100       110      

         
pF1KB6 ST

>>CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12              (116 aa)
 initn: 606 init1: 575 opt: 586  Z-score: 568.9  bits: 110.6 E(32554): 2.3e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
CCDS73     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.   
CCDS73 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG
         60        70        80        90       100       110      

         
pF1KB6 ST

>>CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12              (117 aa)
 initn: 606 init1: 575 opt: 586  Z-score: 568.9  bits: 110.6 E(32554): 2.3e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
CCDS31     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.   
CCDS31 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKY
         60        70        80        90       100       110      

         
pF1KB6 ST
         
CCDS31 R 
         

>>CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1                  (100 aa)
 initn: 491 init1: 455 opt: 461  Z-score: 452.1  bits: 88.8 E(32554): 7.3e-19
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (24-114:5-94)

               10        20        30        40        50        60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
                              :     ::::::::: :::::::::::::::::::::
CCDS88                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                                  10        20        30        40 

               70        80        90       100       110          
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST  
       :::::::::::::::::::::::::::::::::: ::  : :.   .:.::::.      
CCDS88 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIVWVVSS
              50        60        70        80         90       100




118 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:56:32 2016 done: Fri Nov  4 23:56:33 2016
 Total Scan time:  1.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]