Result of FASTA (omim) for
pF1KB6771
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6771, 118 aa
1>>>pF1KB6771 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3793+/-0.000232; mu= 8.6516+/- 0.015
mean_var=112.4185+/-21.862, 0's: 0 Z-trim(125.6): 16 B-trim: 0 in 0/59
Lambda= 0.120964
statistics sampled from 49656 (49674) to 49656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.862), E-opt: 0.2 (0.582), width: 16
Scan time: 4.450
The best scores are: opt bits E(85289)
NP_001317054 (OMIM: 185881) vesicle-associated mem ( 118) 765 142.1 2e-34
NP_055047 (OMIM: 185881) vesicle-associated membra ( 116) 743 138.2 2.9e-33
NP_055046 (OMIM: 108600,185880) vesicle-associated ( 118) 608 114.7 3.6e-26
NP_058439 (OMIM: 108600,185880) vesicle-associated ( 116) 586 110.8 5.1e-25
NP_001284367 (OMIM: 108600,185880) vesicle-associa ( 116) 586 110.8 5.1e-25
NP_954740 (OMIM: 108600,185880) vesicle-associated ( 117) 586 110.8 5.1e-25
NP_004772 (OMIM: 603657) vesicle-associated membra ( 100) 461 89.0 1.7e-18
XP_016858330 (OMIM: 603657) PREDICTED: vesicle-ass ( 122) 461 89.0 2e-18
NP_001172056 (OMIM: 606909) vesicle-associated mem ( 140) 269 55.6 2.7e-08
NP_003753 (OMIM: 606909) vesicle-associated membra ( 141) 269 55.6 2.7e-08
NP_003752 (OMIM: 603177) vesicle-associated membra ( 100) 235 49.5 1.3e-06
NP_006625 (OMIM: 607029) vesicle-associated membra ( 116) 201 43.6 8.6e-05
XP_016885552 (OMIM: 300053) PREDICTED: vesicle-ass ( 173) 179 39.9 0.0017
XP_016885249 (OMIM: 300053) PREDICTED: vesicle-ass ( 173) 179 39.9 0.0017
NP_001138621 (OMIM: 300053) vesicle-associated mem ( 179) 179 39.9 0.0017
NP_005629 (OMIM: 300053) vesicle-associated membra ( 220) 179 40.0 0.002
>>NP_001317054 (OMIM: 185881) vesicle-associated membran (118 aa)
initn: 765 init1: 765 opt: 765 Z-score: 738.9 bits: 142.1 E(85289): 2e-34
Smith-Waterman score: 765; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
70 80 90 100 110
>>NP_055047 (OMIM: 185881) vesicle-associated membrane p (116 aa)
initn: 743 init1: 743 opt: 743 Z-score: 718.2 bits: 138.2 E(85289): 2.9e-33
Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 115 aa overlap (4-118:2-116)
10 20 30 40 50 60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
10 20 30 40 50
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
60 70 80 90 100 110
>>NP_055046 (OMIM: 108600,185880) vesicle-associated mem (118 aa)
initn: 628 init1: 597 opt: 608 Z-score: 590.8 bits: 114.7 E(85289): 3.6e-26
Smith-Waterman score: 608; 77.8% identity (90.6% similar) in 117 aa overlap (6-118:2-118)
10 20 30 40 50
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
.: . ::: . : ::::.::::.:::::::::::::.:::::.::::::::
NP_055 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..::
NP_055 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYF
60 70 80 90 100 110
pF1KB6 ST
:
NP_055 FT
>>NP_058439 (OMIM: 108600,185880) vesicle-associated mem (116 aa)
initn: 606 init1: 575 opt: 586 Z-score: 570.1 bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)
10 20 30 40 50
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
.: . ::: . : ::::.::::.:::::::::::::.:::::.::::::::
NP_058 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.
NP_058 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD
60 70 80 90 100 110
pF1KB6 ST
>>NP_001284367 (OMIM: 108600,185880) vesicle-associated (116 aa)
initn: 606 init1: 575 opt: 586 Z-score: 570.1 bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)
10 20 30 40 50
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
.: . ::: . : ::::.::::.:::::::::::::.:::::.::::::::
NP_001 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.
NP_001 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG
60 70 80 90 100 110
pF1KB6 ST
>>NP_954740 (OMIM: 108600,185880) vesicle-associated mem (117 aa)
initn: 606 init1: 575 opt: 586 Z-score: 570.1 bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)
10 20 30 40 50
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
.: . ::: . : ::::.::::.:::::::::::::.:::::.::::::::
NP_954 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.
NP_954 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKY
60 70 80 90 100 110
pF1KB6 ST
NP_954 R
>>NP_004772 (OMIM: 603657) vesicle-associated membrane p (100 aa)
initn: 491 init1: 455 opt: 461 Z-score: 453.1 bits: 89.0 E(85289): 1.7e-18
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (24-114:5-94)
10 20 30 40 50 60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
: ::::::::: :::::::::::::::::::::
NP_004 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
10 20 30 40
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
:::::::::::::::::::::::::::::::::: :: : :. .:.::::.
NP_004 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIVWVVSS
50 60 70 80 90 100
>>XP_016858330 (OMIM: 603657) PREDICTED: vesicle-associa (122 aa)
initn: 459 init1: 448 opt: 461 Z-score: 451.9 bits: 89.0 E(85289): 2e-18
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (24-114:5-94)
10 20 30 40 50 60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
: ::::::::: :::::::::::::::::::::
XP_016 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
10 20 30 40
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
:::::::::::::::::::::::::::::::::: :: : :. .:.::::.
XP_016 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIGELPFS
50 60 70 80 90 100
XP_016 KLIGKVFSMCSQTIDFVYKNSD
110 120
>>NP_001172056 (OMIM: 606909) vesicle-associated membran (140 aa)
initn: 255 init1: 242 opt: 269 Z-score: 270.0 bits: 55.6 E(85289): 2.7e-08
Smith-Waterman score: 269; 36.7% identity (76.5% similar) in 98 aa overlap (17-114:39-132)
10 20 30 40
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVD
: .:: : : .....: :::::.:
NP_001 LNDDDVTGSVKSERRNLLEDDSDEEEDFFLGPSGPRFGP----RNDKIKHVQNQVDEVID
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 IMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICA
.:. :. ::.:: ..:.::.:....:. .:. : . . .:.:..::.. :. :.... :
NP_001 VMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAA
70 80 90 100 110 120
110
pF1KB6 IILIIIIVYFST
:.:..::.
NP_001 ILLLVIIILIVMKYRT
130 140
>>NP_003753 (OMIM: 606909) vesicle-associated membrane p (141 aa)
initn: 255 init1: 242 opt: 269 Z-score: 270.0 bits: 55.6 E(85289): 2.7e-08
Smith-Waterman score: 269; 36.7% identity (76.5% similar) in 98 aa overlap (17-114:40-133)
10 20 30 40
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVD
: .:: : : .....: :::::.:
NP_003 NDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGP----RNDKIKHVQNQVDEVID
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 IMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICA
.:. :. ::.:: ..:.::.:....:. .:. : . . .:.:..::.. :. :.... :
NP_003 VMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAA
70 80 90 100 110 120
110
pF1KB6 IILIIIIVYFST
:.:..::.
NP_003 ILLLVIIILIVMKYRT
130 140
118 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:56:33 2016 done: Fri Nov 4 23:56:34 2016
Total Scan time: 4.450 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]