Result of FASTA (ccds) for
pF1KB6773
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6773, 118 aa
1>>>pF1KB6773 118 - 118 aa - 118 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5049+/-0.000533; mu= 8.4693+/- 0.033
mean_var=120.1038+/-23.696, 0's: 0 Z-trim(118.3): 16 B-trim: 0 in 0/55
Lambda= 0.117030
statistics sampled from 19241 (19257) to 19241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.592), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12 ( 118) 788 141.7 9.8e-35
CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12 ( 116) 754 136.0 5.2e-33
CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12 ( 116) 754 136.0 5.2e-33
CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12 ( 117) 754 136.0 5.2e-33
CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17 ( 116) 609 111.5 1.2e-25
CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17 ( 118) 608 111.3 1.4e-25
CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1 ( 100) 463 86.8 2.8e-18
>>CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12 (118 aa)
initn: 788 init1: 788 opt: 788 Z-score: 737.1 bits: 141.7 E(32554): 9.8e-35
Smith-Waterman score: 788; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
70 80 90 100 110
>>CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12 (116 aa)
initn: 754 init1: 754 opt: 754 Z-score: 706.2 bits: 136.0 E(32554): 5.2e-33
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG
70 80 90 100 110
>>CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12 (116 aa)
initn: 754 init1: 754 opt: 754 Z-score: 706.2 bits: 136.0 E(32554): 5.2e-33
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD
70 80 90 100 110
>>CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12 (117 aa)
initn: 754 init1: 754 opt: 754 Z-score: 706.1 bits: 136.0 E(32554): 5.2e-33
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR
70 80 90 100 110
>>CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17 (116 aa)
initn: 628 init1: 597 opt: 609 Z-score: 573.8 bits: 111.5 E(32554): 1.2e-25
Smith-Waterman score: 609; 78.3% identity (89.2% similar) in 120 aa overlap (1-118:1-116)
10 20 30 40 50
pF1KB6 MSAPAQ--PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLER
::: : ::: . : ::::.::::.:::::::::::::.:::::.::::::::::
CCDS32 MSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLER
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 DQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..:: :
CCDS32 DQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
60 70 80 90 100 110
>>CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17 (118 aa)
initn: 628 init1: 597 opt: 608 Z-score: 572.8 bits: 111.3 E(32554): 1.4e-25
Smith-Waterman score: 608; 77.8% identity (90.6% similar) in 117 aa overlap (2-118:6-118)
10 20 30 40 50
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
.: . ::: . : ::::.::::.:::::::::::::.:::::.::::::::
CCDS82 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYF
::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..::
CCDS82 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
60 70 80 90 100 110
pF1KB6 FT
:
CCDS82 ST
>>CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1 (100 aa)
initn: 454 init1: 437 opt: 463 Z-score: 441.5 bits: 86.8 E(32554): 2.8e-18
Smith-Waterman score: 463; 73.1% identity (88.2% similar) in 93 aa overlap (23-115:4-96)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
:: ::::::::: ::.:::::.::::::::::::
CCDS88 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
10 20 30 40
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
::::::::::::::::::::.:::::::::::::::: . .. .:....:...
CCDS88 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
50 60 70 80 90 100
118 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:08:53 2016 done: Sat Nov 5 20:08:53 2016
Total Scan time: 1.830 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]