FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6777, 119 aa
  1>>>pF1KB6777 119 - 119 aa - 119 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1343+/-0.000735; mu= 10.6421+/- 0.044
 mean_var=55.3104+/-11.283, 0's: 0 Z-trim(107.7): 49  B-trim: 342 in 1/48
 Lambda= 0.172453
 statistics sampled from 9678 (9728) to 9678 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.299), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS10113.1 B2M gene_id:567|Hs108|chr15            ( 119)  791 204.4 1.3e-53
CCDS4764.1 DPA1 gene_id:3113|Hs108|chr6            ( 260)  229 64.7 3.3e-11


>>CCDS10113.1 B2M gene_id:567|Hs108|chr15                 (119 aa)
 initn: 791 init1: 791 opt: 791  Z-score: 1075.7  bits: 204.4 E(32554): 1.3e-53
Smith-Waterman score: 791; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KB6 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KB6 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
               70        80        90       100       110         

>>CCDS4764.1 DPA1 gene_id:3113|Hs108|chr6                 (260 aa)
 initn: 163 init1: 117 opt: 229  Z-score: 314.6  bits: 64.7 E(32554): 3.3e-11
Smith-Waterman score: 229; 35.4% identity (64.6% similar) in 99 aa overlap (19-116:112-210)

                           10        20        30        40        
pF1KB6             MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVS
                                     .: .  :.. :. ..:.: :. : : :...
CCDS47 AFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHID
              90       100       110       120       130       140 

       50        60         70        80        90       100       
pF1KB6 GFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTL
        : :  ..:  : ::: . : : .: .    :.::. ..:  :.:. .: : :::.:  :
CCDS47 KFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGL
             150       160       170       180       190       200 

       110                                                        
pF1KB6 SQPKIVKWDRDM                                               
       .:: . .:.                                                  
CCDS47 DQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL
             210       220       230       240       250       260




119 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:58:11 2016 done: Fri Nov  4 23:58:11 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]