Result of FASTA (ccds) for
pF1KB6781
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6781, 120 aa
1>>>pF1KB6781 120 - 120 aa - 120 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9155+/-0.000599; mu= 11.8725+/- 0.036
mean_var=52.8073+/-10.399, 0's: 0 Z-trim(110.0): 46 B-trim: 0 in 0/51
Lambda= 0.176493
statistics sampled from 11213 (11259) to 11213 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.346), width: 16
Scan time: 1.650
The best scores are: opt bits E(32554)
CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17 ( 120) 795 209.6 3.8e-55
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 247 70.0 3e-13
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 246 69.8 3.7e-13
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 240 68.2 1.1e-12
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 232 66.2 4.3e-12
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 219 62.9 4.2e-11
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 ( 99) 218 62.6 5.4e-11
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 215 61.9 1e-10
>>CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17 (120 aa)
initn: 795 init1: 795 opt: 795 Z-score: 1103.6 bits: 209.6 E(32554): 3.8e-55
Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
70 80 90 100 110 120
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 232 init1: 137 opt: 247 Z-score: 351.3 bits: 70.0 E(32554): 3e-13
Smith-Waterman score: 247; 39.4% identity (71.3% similar) in 94 aa overlap (1-93:1-91)
10 20 30 40 50
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN-
::. ..::::.:. . : . : .: . :..::..: . ::: .:: : .. .
CCDS11 MKLCVTVLSLLMLVAAFCSPALS---APMGSDPPTACCFSYTARKLPRNFVVDYYETSSL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
: ::..: :::...::..:...:::::. : .:
CCDS11 CSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
120
pF1KB6 Q
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 249 init1: 161 opt: 246 Z-score: 349.8 bits: 69.8 E(32554): 3.7e-13
Smith-Waterman score: 246; 41.3% identity (69.6% similar) in 92 aa overlap (1-90:1-89)
10 20 30 40 50
pF1KB6 MKVSEAALSLLVLILI-ITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN
::.: ::. ...:: : . . ..:. . : :: ::. : .::. .. : .. .
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPY---HPSECCFTYTTYKIPRQRIMDYYETNS
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 -CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
: :.:.:.:::.. :::::.: :::.::::
CCDS32 QCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
60 70 80 90
120
pF1KB6 SQ
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 203 init1: 125 opt: 240 Z-score: 341.5 bits: 68.2 E(32554): 1.1e-12
Smith-Waterman score: 240; 35.1% identity (74.5% similar) in 94 aa overlap (1-93:1-91)
10 20 30 40 50
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
:.:: :::..:. . . . : : . ..::..::..: . .:. ... : . . .
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLA---ADTPTACCFSYTSRQIPQNFIADYFETSSQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
: :..::.:::.:.::..:...:::.:..: .:
CCDS32 CSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
120
pF1KB6 Q
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 204 init1: 126 opt: 232 Z-score: 330.6 bits: 66.2 E(32554): 4.3e-12
Smith-Waterman score: 232; 36.2% identity (74.5% similar) in 94 aa overlap (1-93:1-90)
10 20 30 40 50
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
:.:: :::. .:. : : .: .. ..::..::..: . .:. ... : . . .
CCDS11 MQVSTAALA----VLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
: :..::.:::.:.::..:...:::.:..: .:
CCDS11 CSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
120
pF1KB6 Q
>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 (91 aa)
initn: 216 init1: 136 opt: 219 Z-score: 312.8 bits: 62.9 E(32554): 4.2e-11
Smith-Waterman score: 219; 38.2% identity (66.3% similar) in 89 aa overlap (1-88:1-85)
10 20 30 40 50
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGY-RKALN
:::: :::..... . . . ..: . .:: ::. : . ::: . : . .
CCDS11 MKVSAAALAVILIATALCAPASASPYSSD--TTP--CCFAYIARPLPRAHIKEYFYTSGK
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNS
: ::..:::..::.::.::. ::.:::
CCDS11 CSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 (99 aa)
initn: 230 init1: 115 opt: 218 Z-score: 310.8 bits: 62.6 E(32554): 5.4e-11
Smith-Waterman score: 218; 35.2% identity (68.1% similar) in 91 aa overlap (1-89:1-88)
10 20 30 40 50 60
pF1KB6 MKVSEAALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALNC
::.: : : ::. .. . .: : .:: .::: .. .: .:.. . .::.. .
CCDS11 MKASAALLCLLLTAAAFSPQGLAQ---PVGINTSTTCCYRFINKKIPKQRLESYRRTTSS
10 20 30 40 50
70 80 90 100 110
pF1KB6 HLP--AIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
: : :.:: :: ..:.:..:.. :::...:
CCDS11 HCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
60 70 80 90
120
pF1KB6 SQ
>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 (109 aa)
initn: 263 init1: 161 opt: 215 Z-score: 306.1 bits: 61.9 E(32554): 1e-10
Smith-Waterman score: 230; 39.0% identity (63.8% similar) in 105 aa overlap (1-90:1-105)
10 20 30 40
pF1KB6 MKVSEAALSLLVLILII-------TSASRSQPKVPE----WVNTP---STCCLKYYEKVL
::.: ::. ...:: : .: . ..::: . :. : : ::. : .
CCDS45 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 PRRLVVGYRKALN-CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVK
::. .. : .. . : :.:.:.:::.. :::::.: :::.::::
CCDS45 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90 100
110 120
pF1KB6 IITAKNGQPQLLNSQ
120 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:31:37 2016 done: Sat Nov 5 17:31:37 2016
Total Scan time: 1.650 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]