FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6782, 153 aa
  1>>>pF1KB6782     153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4778+/-0.000818; mu= 10.9169+/- 0.049
 mean_var=64.5827+/-12.563, 0's: 0 Z-trim(106.5): 6  B-trim: 0 in 0/53
 Lambda= 0.159594
 statistics sampled from 9130 (9132) to 9130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.273), width:  16
 Scan time:  0.850

The best scores are:                                      opt bits E(33420)
CCDS3726.1 IL2 gene_id:3558|Hs109|chr4             ( 153)  971 231.9 1.2e-61


>>CCDS3726.1 IL2 gene_id:3558|Hs109|chr4                  (153 aa)
 initn: 971 init1: 971 opt: 971  Z-score: 1220.5  bits: 231.9 E(33420): 1.2e-61
Smith-Waterman score: 971; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KB6 MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 TFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSE
               70        80        90       100       110       120

              130       140       150   
pF1KB6 TTFMCEYADETATIVEFLNRWITFCQSIISTLT
       :::::::::::::::::::::::::::::::::
CCDS37 TTFMCEYADETATIVEFLNRWITFCQSIISTLT
              130       140       150   




153 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:53:22 2019 done: Thu Oct 24 21:53:22 2019
 Total Scan time:  0.850 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]