FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6782, 153 aa
  1>>>pF1KB6782     153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3183+/-0.000345; mu= 11.9863+/- 0.021
 mean_var=67.8710+/-13.427, 0's: 0 Z-trim(113.7): 4  B-trim: 0 in 0/54
 Lambda= 0.155680
 statistics sampled from 24176 (24179) to 24176 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.262), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(92320)
NP_000577 (OMIM: 147680) interleukin-2 precursor [ ( 153)  971 226.7 1.3e-59
XP_016863666 (OMIM: 147680) interleukin-2 isoform  ( 131)  735 173.6   1e-43


>>NP_000577 (OMIM: 147680) interleukin-2 precursor [Homo  (153 aa)
 initn: 971 init1: 971 opt: 971  Z-score: 1192.1  bits: 226.7 E(92320): 1.3e-59
Smith-Waterman score: 971; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KB6 MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSE
               70        80        90       100       110       120

              130       140       150   
pF1KB6 TTFMCEYADETATIVEFLNRWITFCQSIISTLT
       :::::::::::::::::::::::::::::::::
NP_000 TTFMCEYADETATIVEFLNRWITFCQSIISTLT
              130       140       150   

>>XP_016863666 (OMIM: 147680) interleukin-2 isoform X1 [  (131 aa)
 initn: 735 init1: 735 opt: 735  Z-score: 906.6  bits: 173.6 E(92320): 1e-43
Smith-Waterman score: 735; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KB6 MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYRMQLLSCIALSLALVTNSAPTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_016 TFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKEHK
               70        80        90       100       110       120

              130       140       150   
pF1KB6 TTFMCEYADETATIVEFLNRWITFCQSIISTLT
                                        
XP_016 PSSQRKEESTC                      
              130                       




153 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:53:23 2019 done: Thu Oct 24 21:53:23 2019
 Total Scan time:  2.790 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]