FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6788, 154 aa
  1>>>pF1KB6788 154 - 154 aa - 154 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9830+/-0.000801; mu= 10.3708+/- 0.048
 mean_var=95.5240+/-18.497, 0's: 0 Z-trim(110.1): 7  B-trim: 0 in 0/51
 Lambda= 0.131225
 statistics sampled from 11370 (11373) to 11370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.349), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS1217.1 PFDN2 gene_id:5202|Hs108|chr1           ( 154)  954 189.8 5.6e-49


>>CCDS1217.1 PFDN2 gene_id:5202|Hs108|chr1                (154 aa)
 initn: 954 init1: 954 opt: 954  Z-score: 992.8  bits: 189.8 E(32554): 5.6e-49
Smith-Waterman score: 954; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KB6 MAENSGRAGKSSGSGAGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAENSGRAGKSSGSGAGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFRE
               70        80        90       100       110       120

              130       140       150    
pF1KB6 KHNIRLMGEDEKPAAKENSEGAGAKASSAGVLVS
       ::::::::::::::::::::::::::::::::::
CCDS12 KHNIRLMGEDEKPAAKENSEGAGAKASSAGVLVS
              130       140       150    




154 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:01:00 2016 done: Sat Nov  5 00:01:00 2016
 Total Scan time:  1.520 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]