FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6791, 127 aa
  1>>>pF1KB6791 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2919+/-0.000889; mu= 10.4540+/- 0.053
 mean_var=53.4177+/-10.512, 0's: 0 Z-trim(103.5): 22  B-trim: 162 in 2/49
 Lambda= 0.175482
 statistics sampled from 7438 (7456) to 7438 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.229), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS2001.1 FABP1 gene_id:2168|Hs108|chr2           ( 127)  793 208.6 8.7e-55
CCDS4349.1 FABP6 gene_id:2172|Hs108|chr5           ( 128)  337 93.1 4.9e-20
CCDS43393.1 FABP6 gene_id:2172|Hs108|chr5          ( 177)  337 93.2 6.7e-20


>>CCDS2001.1 FABP1 gene_id:2168|Hs108|chr2                (127 aa)
 initn: 793 init1: 793 opt: 793  Z-score: 1097.1  bits: 208.6 E(32554): 8.7e-55
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB6 MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKSVTELNGDIITNTMTLGDIVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKSVTELNGDIITNTMTLGDIVF
               70        80        90       100       110       120

              
pF1KB6 KRISKRI
       :::::::
CCDS20 KRISKRI
              

>>CCDS4349.1 FABP6 gene_id:2172|Hs108|chr5                (128 aa)
 initn: 322 init1: 139 opt: 337  Z-score: 473.1  bits: 93.1 E(32554): 4.9e-20
Smith-Waterman score: 337; 36.7% identity (82.0% similar) in 128 aa overlap (1-127:1-127)

               10        20        30        40        50          
pF1KB6 MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTIT-AGSKVI
       :.:.::....:..:.. ::: .:.  ..:.:....: :.:. :.:. : ..   .:....
CCDS43 MAFTGKFEMESEKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTM
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 QNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKSVTELNGDIITNTMTLGDIV
        :.::::.: ...:: :.  :..::.:: .:::..: : ....:. :: .... :.: ..
CCDS43 TNKFTVGKESNIQTMGGKTFKATVQMEG-GKLVVNFPNYHQTSEIVGDKLVEVSTIGGVT
               70        80         90       100       110         

     120        
pF1KB6 FKRISKRI 
       ..:.:::. 
CCDS43 YERVSKRLA
     120        

>>CCDS43393.1 FABP6 gene_id:2172|Hs108|chr5               (177 aa)
 initn: 322 init1: 139 opt: 337  Z-score: 470.8  bits: 93.2 E(32554): 6.7e-20
Smith-Waterman score: 337; 36.7% identity (82.0% similar) in 128 aa overlap (1-127:50-176)

                                             10        20        30
pF1KB6                               MSFSGKYQLQSQENFEAFMKAIGLPEELIQ
                                     :.:.::....:..:.. ::: .:.  ..:.
CCDS43 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
      20        30        40        50        60        70         

               40        50         60        70        80         
pF1KB6 KGKDIKGVSEIVQNGKHFKFTIT-AGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDN
       :....: :.:. :.:. : ..   .:.... :.::::.: ...:: :.  :..::.:: .
CCDS43 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEG-G
      80        90       100       110       120       130         

      90       100       110       120        
pF1KB6 KLVTTFKNIKSVTELNGDIITNTMTLGDIVFKRISKRI 
       :::..: : ....:. :: .... :.: ....:.:::. 
CCDS43 KLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
      140       150       160       170       




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:37:35 2016 done: Sat Nov  5 17:37:35 2016
 Total Scan time:  1.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]