Result of FASTA (ccds) for
pF1KB6792
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6792, 155 aa
1>>>pF1KB6792 155 - 155 aa - 155 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2279+/-0.000674; mu= 12.0475+/- 0.041
mean_var=55.8541+/-11.508, 0's: 0 Z-trim(109.4): 19 B-trim: 172 in 1/51
Lambda= 0.171612
statistics sampled from 10832 (10851) to 10832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.333), width: 16
Scan time: 1.850
The best scores are: opt bits E(32554)
CCDS2111.1 IL36RN gene_id:26525|Hs108|chr2 ( 155) 1060 269.9 4.4e-73
CCDS2115.1 IL1RN gene_id:3557|Hs108|chr2 ( 143) 414 109.9 5.8e-25
CCDS2113.1 IL1RN gene_id:3557|Hs108|chr2 ( 159) 414 110.0 6.3e-25
CCDS46396.1 IL1RN gene_id:3557|Hs108|chr2 ( 177) 414 110.0 7e-25
CCDS2114.1 IL1RN gene_id:3557|Hs108|chr2 ( 180) 414 110.0 7.1e-25
CCDS2112.1 IL1F10 gene_id:84639|Hs108|chr2 ( 152) 365 97.8 2.7e-21
CCDS2110.1 IL36B gene_id:27177|Hs108|chr2 ( 157) 260 71.8 1.9e-13
CCDS42734.1 IL36A gene_id:27179|Hs108|chr2 ( 158) 245 68.1 2.5e-12
CCDS62992.1 IL36G gene_id:56300|Hs108|chr2 ( 134) 230 64.4 2.8e-11
CCDS2108.1 IL36G gene_id:56300|Hs108|chr2 ( 169) 230 64.4 3.5e-11
CCDS2107.1 IL37 gene_id:27178|Hs108|chr2 ( 192) 229 64.2 4.6e-11
CCDS2104.1 IL37 gene_id:27178|Hs108|chr2 ( 197) 229 64.2 4.7e-11
CCDS2103.1 IL37 gene_id:27178|Hs108|chr2 ( 218) 229 64.2 5.2e-11
>>CCDS2111.1 IL36RN gene_id:26525|Hs108|chr2 (155 aa)
initn: 1060 init1: 1060 opt: 1060 Z-score: 1425.5 bits: 269.9 E(32554): 4.4e-73
Smith-Waterman score: 1060; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)
10 20 30 40 50 60
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VQGGSQCLSCGVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VQGGSQCLSCGVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWF
70 80 90 100 110 120
130 140 150
pF1KB6 LCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
:::::::::::::::::::::::::::::::::::
CCDS21 LCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
130 140 150
>>CCDS2115.1 IL1RN gene_id:3557|Hs108|chr2 (143 aa)
initn: 410 init1: 242 opt: 414 Z-score: 561.7 bits: 109.9 E(32554): 5.8e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:4-141)
10 20 30 40 50
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VI
::. : :..::.::::.:: :.. .: :.:.::: . : ..
CCDS21 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP-------IEPHALF
10 20 30 40
60 70 80 90 100 110
pF1KB6 LGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYP
::..::..:::: :.: : :: ::: .: . :..: :.: : : : :.:::::: :
CCDS21 LGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACP
50 60 70 80 90 100
120 130 140 150
pF1KB6 GWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
::::::. :::::: ::..:..: . .: ::::.
CCDS21 GWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
110 120 130 140
>>CCDS2113.1 IL1RN gene_id:3557|Hs108|chr2 (159 aa)
initn: 410 init1: 242 opt: 414 Z-score: 560.9 bits: 110.0 E(32554): 6.3e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:20-157)
10 20 30 40
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRW
::. : :..::.::::.:: :.. .: :.:.:::
CCDS21 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP---
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 LDASLSP--VILGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMG
. : ..::..::..:::: :.: : :: ::: .: . :..: :.: : : :
CCDS21 ----IEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSG
60 70 80 90 100 110
110 120 130 140 150
pF1KB6 LTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
:.:::::: :::::::. :::::: ::..:..: . .: ::::.
CCDS21 PTTSFESAACPGWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
120 130 140 150
>>CCDS46396.1 IL1RN gene_id:3557|Hs108|chr2 (177 aa)
initn: 410 init1: 242 opt: 414 Z-score: 560.2 bits: 110.0 E(32554): 7e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:38-175)
10 20 30
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIK
::. : :..::.::::.:: :.. .:
CCDS46 RSHLITLLLFLFHSETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 GEEISVVPNRWLDASLSP--VILGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKES
:.:.::: . : ..::..::..:::: :.: : :: ::: .: . :..
CCDS46 EEKIDVVP-------IEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQD
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 KSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
: :.: : : : :.:::::: :::::::. :::::: ::..:..: . .: ::::.
CCDS46 KRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
130 140 150 160 170
>>CCDS2114.1 IL1RN gene_id:3557|Hs108|chr2 (180 aa)
initn: 410 init1: 242 opt: 414 Z-score: 560.1 bits: 110.0 E(32554): 7.1e-25
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (9-153:41-178)
10 20 30
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIK
::. : :..::.::::.:: :.. .:
CCDS21 GGGGGEGEDNADSKETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 GEEISVVPNRWLDASLSP--VILGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKES
:.:.::: . : ..::..::..:::: :.: : :: ::: .: . :..
CCDS21 EEKIDVVP-------IEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQD
80 90 100 110 120
100 110 120 130 140 150
pF1KB6 KSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
: :.: : : : :.:::::: :::::::. :::::: ::..:..: . .: ::::.
CCDS21 KRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
130 140 150 160 170 180
>>CCDS2112.1 IL1F10 gene_id:84639|Hs108|chr2 (152 aa)
initn: 342 init1: 210 opt: 365 Z-score: 495.7 bits: 97.8 E(32554): 2.7e-21
Smith-Waterman score: 365; 43.8% identity (68.8% similar) in 144 aa overlap (11-153:12-150)
10 20 30 40 50
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVIL
.: . :.:: ...:::.: : . .:.: ..::: : . :..:
CCDS21 MCSLPMARYYIIKYADQKALYTRDGQLLVGDPVADNCC-AEKICILPNRGLARTKVPIFL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GVQGGSQCLSCGVGQE-PTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPG
:.::::.::.: .: :.: :: ::: ::: :..:. :::.. . : . .:.::.::
CCDS21 GIQGGSRCLACVETEEGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPG
60 70 80 90 100 110
120 130 140 150
pF1KB6 WFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
:::: : .:::.::. : .. : :::.:
CCDS21 WFLCGPAEPQQPVQLTKESEPSAR----TKFYFEQSW
120 130 140 150
>>CCDS2110.1 IL36B gene_id:27177|Hs108|chr2 (157 aa)
initn: 224 init1: 187 opt: 260 Z-score: 355.0 bits: 71.8 E(32554): 1.9e-13
Smith-Waterman score: 260; 35.7% identity (59.7% similar) in 154 aa overlap (9-155:12-157)
10 20 30 40 50
pF1KB6 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP-
. ..:: : : .:.:.:. : .. :: . .. : :. .:
CCDS21 MNPQREAAPKSYAIRDSRQMVWVLSGNSLIAAPL--SRSIKPVTLHLIACR--DTEFSDK
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 -----VILGVQGGSQCLSCGVGQ-EPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSS
: ::..: . :: :. : .::: :. :::.::. : .: : :.. : ::
CCDS21 EKGNMVYLGIKGKDLCLFCAEIQGKPTLQLKEKNIMDLYVEKKAQKPFLFFHNKEGSTSV
60 70 80 90 100 110
120 130 140 150
pF1KB6 FESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
:.:..:::::. : . ::. ::. : : : :.::... .
CCDS21 FQSVSYPGWFIATSTTSGQPIFLTK--ERGITNN--TNFYLDSVE
120 130 140 150
>>CCDS42734.1 IL36A gene_id:27179|Hs108|chr2 (158 aa)
initn: 224 init1: 192 opt: 245 Z-score: 334.9 bits: 68.1 E(32554): 2.5e-12
Smith-Waterman score: 245; 44.8% identity (68.8% similar) in 96 aa overlap (55-149:61-152)
30 40 50 60 70 80
pF1KB6 QLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILGVQGGSQCLSCG-VGQEPTLTLEPV
.:. ::..: . :: :. ::..::: :.
CCDS42 IAVPRKDRMSPVTIALISCRHVETLEKDRGNPIYLGLNGLNLCLMCAKVGDQPTLQLKEK
40 50 60 70 80 90
90 100 110 120 130 140
pF1KB6 NIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWN
.::.:: . ::: ::. . : .:.:::.:.::::. . :. :. ::: : : .
CCDS42 DIMDLYNQPEPVKSFLFYHSQSGRNSTFESVAFPGWFIAVSSEGGCPLILTQ--ELG--K
100 110 120 130 140
150
pF1KB6 APITDFYFQQCD
: :::
CCDS42 ANTTDFGLTMLF
150
>>CCDS62992.1 IL36G gene_id:56300|Hs108|chr2 (134 aa)
initn: 217 init1: 160 opt: 230 Z-score: 315.9 bits: 64.4 E(32554): 2.8e-11
Smith-Waterman score: 230; 45.0% identity (67.5% similar) in 80 aa overlap (56-134:39-117)
30 40 50 60 70 80
pF1KB6 LLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILGVQGGSQCLSC-GVGQEPTLTLEPVN
:. ::.:. .:: : ::..::: :. .
CCDS62 DGGGRAVYQSITVAVITCKYPEALEQGRGDPIYLGIQNPEMCLYCEKVGEQPTLQLKEQK
10 20 30 40 50 60
90 100 110 120 130 140
pF1KB6 IMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNA
::.:: . : : ::: : ::..::.:.: ::. . . :::. ::
CCDS62 IMDLYGQPEPVKPFLFYRAKTGRTSTLESVAFPDWFIAS-SKRDQPIILTSELGKSYNTA
70 80 90 100 110 120
150
pF1KB6 PITDFYFQQCD
CCDS62 FELNIND
130
>>CCDS2108.1 IL36G gene_id:56300|Hs108|chr2 (169 aa)
initn: 217 init1: 160 opt: 230 Z-score: 314.3 bits: 64.4 E(32554): 3.5e-11
Smith-Waterman score: 230; 45.0% identity (67.5% similar) in 80 aa overlap (56-134:74-152)
30 40 50 60 70 80
pF1KB6 LLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILGVQGGSQCLSC-GVGQEPTLTLEPVN
:. ::.:. .:: : ::..::: :. .
CCDS21 AVPRSDSVTPVTVAVITCKYPEALEQGRGDPIYLGIQNPEMCLYCEKVGEQPTLQLKEQK
50 60 70 80 90 100
90 100 110 120 130 140
pF1KB6 IMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNA
::.:: . : : ::: : ::..::.:.: ::. . . :::. ::
CCDS21 IMDLYGQPEPVKPFLFYRAKTGRTSTLESVAFPDWFIAS-SKRDQPIILTSELGKSYNTA
110 120 130 140 150 160
150
pF1KB6 PITDFYFQQCD
CCDS21 FELNIND
155 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:18:11 2016 done: Sat Nov 5 18:18:11 2016
Total Scan time: 1.850 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]