FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6793, 127 aa
  1>>>pF1KB6793 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6058+/-0.000777; mu= 10.2661+/- 0.047
 mean_var=72.7934+/-13.840, 0's: 0 Z-trim(108.4): 12  B-trim: 99 in 1/51
 Lambda= 0.150324
 statistics sampled from 10175 (10183) to 10175 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.313), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS7380.1 SNCG gene_id:6623|Hs108|chr10           ( 127)  756 172.3   7e-44
CCDS3634.1 SNCA gene_id:6622|Hs108|chr4            ( 140)  388 92.5   8e-20
CCDS43252.1 SNCA gene_id:6622|Hs108|chr4           ( 112)  383 91.4 1.4e-19
CCDS4406.1 SNCB gene_id:6620|Hs108|chr5            ( 134)  342 82.6 7.8e-17
CCDS81483.1 SNCG gene_id:6623|Hs108|chr10          ( 126)  325 78.9 9.5e-16


>>CCDS7380.1 SNCG gene_id:6623|Hs108|chr10                (127 aa)
 initn: 756 init1: 756 opt: 756  Z-score: 901.3  bits: 172.3 E(32554): 7e-44
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
               70        80        90       100       110       120

              
pF1KB6 EAQSGGD
       :::::::
CCDS73 EAQSGGD
              

>>CCDS3634.1 SNCA gene_id:6622|Hs108|chr4                 (140 aa)
 initn: 569 init1: 381 opt: 388  Z-score: 469.3  bits: 92.5 E(32554): 8e-20
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
CCDS36 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100          110       
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
       ::.. :. :::..:..:: :::: : .::...: :.:..:   . .:::.          
CCDS36 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

       120                 
pF1KB6 VAEEAQSGGD          
                           
CCDS36 DNEAYEMPSEEGYQDYEPEA
              130       140

>>CCDS43252.1 SNCA gene_id:6622|Hs108|chr4                (112 aa)
 initn: 481 init1: 381 opt: 383  Z-score: 464.9  bits: 91.4 E(32554): 1.4e-19
Smith-Waterman score: 383; 62.5% identity (86.6% similar) in 112 aa overlap (1-111:1-112)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
CCDS43 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQ-EGEASKEKEEVA
       ::.. :. :::..:..:: :::: : .::...: :.:..:   . :. : ::        
CCDS43 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKEGYQDYEPEA        
               70        80        90       100       110          

     120       
pF1KB6 EEAQSGGD

>>CCDS4406.1 SNCB gene_id:6620|Hs108|chr5                 (134 aa)
 initn: 570 init1: 341 opt: 342  Z-score: 415.7  bits: 82.6 E(32554): 7.8e-17
Smith-Waterman score: 362; 54.5% identity (73.5% similar) in 132 aa overlap (1-127:1-121)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.:.::::::.:.::::::::::::::::::.:::.::.:.:::.:.:::::::
CCDS44 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
               10        20        30        40        50        60

               70        80        90           100       110      
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKE----DLRPSAPQQEGEASKEKE
       :::. .. :: :.           : :::...:.:..:    ::.:    ::.      :
CCDS44 EQASHLGGAVFSG-----------AGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE
               70                   80        90       100         

        120                     
pF1KB6 EVAE-EAQSGGD             
        . : :..:  :             
CCDS44 PLMEPEGESYEDPPQEEYQEYEPEA
     110       120       130    

>>CCDS81483.1 SNCG gene_id:6623|Hs108|chr10               (126 aa)
 initn: 335 init1: 325 opt: 325  Z-score: 396.2  bits: 78.9 E(32554): 9.5e-16
Smith-Waterman score: 325; 100.0% identity (100.0% similar) in 54 aa overlap (1-54:1-54)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS81 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSGLPWGW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
                                                                   
CCDS81 GWGGGQPVSSHSGREDQGAGQRRERGCGEQRQHCGHQDRGGGGEHRGHLRGGAQGGLEAI
               70        80        90       100       110       120




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:01:33 2016 done: Sat Nov  5 00:01:34 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]