FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6801, 158 aa
  1>>>pF1KB6801 158 - 158 aa - 158 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7749+/-0.00032; mu= 10.5428+/- 0.020
 mean_var=83.1537+/-17.133, 0's: 0 Z-trim(118.1): 5  B-trim: 1361 in 2/53
 Lambda= 0.140648
 statistics sampled from 30692 (30697) to 30692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.36), width:  16
 Scan time:  5.770

The best scores are:                                      opt bits E(85289)
NP_001307982 (OMIM: 177040) serglycin isoform 1 pr ( 158) 1057 223.3 1.3e-58
NP_002718 (OMIM: 177040) serglycin isoform 1 precu ( 158) 1057 223.3 1.3e-58
XP_016871881 (OMIM: 177040) PREDICTED: serglycin i ( 158) 1057 223.3 1.3e-58
NP_001307983 (OMIM: 177040) serglycin isoform 2 [H ( 102)  549 120.1 9.5e-28


>>NP_001307982 (OMIM: 177040) serglycin isoform 1 precur  (158 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1173.5  bits: 223.3 E(85289): 1.3e-58
Smith-Waterman score: 1057; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB6 MMQKLLKCSRLVLALALILVLESSVQGYPTQRARYQWVRCNPDSNSANCLEEKGPMFELL
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 MMQKLLKCSRLVLALALILVLESSVQGYPTRRARYQWVRCNPDSNSANCLEEKGPMFELL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
               70        80        90       100       110       120

              130       140       150        
pF1KB6 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
       ::::::::::::::::::::::::::::::::::::::
NP_001 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
              130       140       150        

>>NP_002718 (OMIM: 177040) serglycin isoform 1 precursor  (158 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1173.5  bits: 223.3 E(85289): 1.3e-58
Smith-Waterman score: 1057; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB6 MMQKLLKCSRLVLALALILVLESSVQGYPTQRARYQWVRCNPDSNSANCLEEKGPMFELL
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_002 MMQKLLKCSRLVLALALILVLESSVQGYPTRRARYQWVRCNPDSNSANCLEEKGPMFELL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
               70        80        90       100       110       120

              130       140       150        
pF1KB6 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
       ::::::::::::::::::::::::::::::::::::::
NP_002 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
              130       140       150        

>>XP_016871881 (OMIM: 177040) PREDICTED: serglycin isofo  (158 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1173.5  bits: 223.3 E(85289): 1.3e-58
Smith-Waterman score: 1057; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB6 MMQKLLKCSRLVLALALILVLESSVQGYPTQRARYQWVRCNPDSNSANCLEEKGPMFELL
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
XP_016 MMQKLLKCSRLVLALALILVLESSVQGYPTRRARYQWVRCNPDSNSANCLEEKGPMFELL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
               70        80        90       100       110       120

              130       140       150        
pF1KB6 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
       ::::::::::::::::::::::::::::::::::::::
XP_016 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
              130       140       150        

>>NP_001307983 (OMIM: 177040) serglycin isoform 2 [Homo   (102 aa)
 initn: 549 init1: 549 opt: 549  Z-score: 619.2  bits: 120.1 E(85289): 9.5e-28
Smith-Waterman score: 549; 100.0% identity (100.0% similar) in 82 aa overlap (77-158:21-102)

         50        60        70        80        90       100      
pF1KB6 ANCLEEKGPMFELLPGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGS
                                     ::::::::::::::::::::::::::::::
NP_001           MQSACPGSCPHPGSGILSSRKTRIQDLNRIFPLSEDYSGSGFGSGSGSGS
                         10        20        30        40        50

        110       120       130       140       150        
pF1KB6 GSGSGFLTEMEQDYQLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGSGFLTEMEQDYQLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
               60        70        80        90       100  




158 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:06:51 2016 done: Sat Nov  5 04:06:51 2016
 Total Scan time:  5.770 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]