FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6807, 159 aa
  1>>>pF1KB6807 159 - 159 aa - 159 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8363+/-0.000333; mu= 11.6309+/- 0.021
 mean_var=103.7041+/-21.088, 0's: 0 Z-trim(117.9): 5  B-trim: 1628 in 2/55
 Lambda= 0.125944
 statistics sampled from 30227 (30231) to 30227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.354), width:  16
 Scan time:  4.440

The best scores are:                                      opt bits E(85289)
NP_000983 (OMIM: 601832) 60S ribosomal protein L29 ( 159) 1034 197.3 8.5e-51


>>NP_000983 (OMIM: 601832) 60S ribosomal protein L29 [Ho  (159 aa)
 initn: 1034 init1: 1034 opt: 1034  Z-score: 1033.0  bits: 197.3 E(85289): 8.5e-51
Smith-Waterman score: 1034; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NAKAMSARAEAIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NAKAMSARAEAIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCR
               70        80        90       100       110       120

              130       140       150         
pF1KB6 PKAKAKAKAKDQTKAQAAAPASVPAQAPKRTQAPTKASE
       :::::::::::::::::::::::::::::::::::::::
NP_000 PKAKAKAKAKDQTKAQAAAPASVPAQAPKRTQAPTKASE
              130       140       150         




159 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:20:44 2016 done: Sat Nov  5 00:20:45 2016
 Total Scan time:  4.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]