FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6809, 159 aa
  1>>>pF1KB6809 159 - 159 aa - 159 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7949+/-0.000744; mu= 14.5995+/- 0.045
 mean_var=55.0032+/-11.185, 0's: 0 Z-trim(107.2): 10  B-trim: 0 in 0/50
 Lambda= 0.172934
 statistics sampled from 9429 (9434) to 9429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.29), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS136.1 AGTRAP gene_id:57085|Hs108|chr1          ( 159) 1066 273.5 3.8e-74
CCDS30585.1 AGTRAP gene_id:57085|Hs108|chr1        ( 152)  998 256.5 4.7e-69


>>CCDS136.1 AGTRAP gene_id:57085|Hs108|chr1               (159 aa)
 initn: 1066 init1: 1066 opt: 1066  Z-score: 1444.6  bits: 273.5 E(32554): 3.8e-74
Smith-Waterman score: 1066; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
               70        80        90       100       110       120

              130       140       150         
pF1KB6 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
       :::::::::::::::::::::::::::::::::::::::
CCDS13 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
              130       140       150         

>>CCDS30585.1 AGTRAP gene_id:57085|Hs108|chr1             (152 aa)
 initn: 777 init1: 777 opt: 998  Z-score: 1353.2  bits: 256.5 E(32554): 4.7e-69
Smith-Waterman score: 998; 95.6% identity (95.6% similar) in 159 aa overlap (1-159:1-152)

               10        20        30        40        50        60
pF1KB6 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS30 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGG-----
               70        80        90       100       110          

              130       140       150         
pF1KB6 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
         :::::::::::::::::::::::::::::::::::::
CCDS30 --FLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
           120       130       140       150  




159 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:38:36 2016 done: Fri Nov  4 14:38:37 2016
 Total Scan time:  1.820 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]