FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6812, 185 aa
  1>>>pF1KB6812 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7046+/-0.000612; mu= 7.7460+/- 0.037
 mean_var=109.0975+/-22.118, 0's: 0 Z-trim(115.5): 10  B-trim: 717 in 1/50
 Lambda= 0.122791
 statistics sampled from 16079 (16087) to 16079 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.494), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS4879.1 MEA1 gene_id:4201|Hs108|chr6            ( 185) 1271 234.5 2.9e-62


>>CCDS4879.1 MEA1 gene_id:4201|Hs108|chr6                 (185 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1231.4  bits: 234.5 E(32554): 2.9e-62
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB6 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
              130       140       150       160       170       180

            
pF1KB6 SPAWK
       :::::
CCDS48 SPAWK
            




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:27:21 2016 done: Fri Nov  4 14:27:21 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]