Result of FASTA (omim) for
pF1KB6812
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6812, 185 aa
1>>>pF1KB6812 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5445+/-0.000261; mu= 8.7744+/- 0.016
mean_var=115.3419+/-23.013, 0's: 0 Z-trim(123.0): 7 B-trim: 0 in 0/57
Lambda= 0.119421
statistics sampled from 42061 (42070) to 42061 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.493), width: 16
Scan time: 6.890
The best scores are: opt bits E(85289)
NP_055438 (OMIM: 143170) male-enhanced antigen 1 i ( 185) 1271 228.5 4.8e-60
XP_005249178 (OMIM: 143170) PREDICTED: male-enhanc ( 188) 1211 218.2 6.3e-57
NP_001305872 (OMIM: 143170) male-enhanced antigen ( 172) 1178 212.4 3e-55
NP_001305871 (OMIM: 143170) male-enhanced antigen ( 172) 1178 212.4 3e-55
XP_016866357 (OMIM: 143170) PREDICTED: male-enhanc ( 142) 840 154.2 8.8e-38
>>NP_055438 (OMIM: 143170) male-enhanced antigen 1 isofo (185 aa)
initn: 1271 init1: 1271 opt: 1271 Z-score: 1199.0 bits: 228.5 E(85289): 4.8e-60
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB6 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
130 140 150 160 170 180
pF1KB6 SPAWK
:::::
NP_055 SPAWK
>>XP_005249178 (OMIM: 143170) PREDICTED: male-enhanced a (188 aa)
initn: 1205 init1: 1205 opt: 1211 Z-score: 1143.0 bits: 218.2 E(85289): 6.3e-57
Smith-Waterman score: 1211; 97.8% identity (98.4% similar) in 183 aa overlap (3-185:8-188)
10 20 30 40 50
pF1KB6 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPE
:.: : ::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MCKYVSRPRRPL--APARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPE
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 EEQEETGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEQEETGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 DEDEEGATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEDEEGATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKAL
120 130 140 150 160 170
180
pF1KB6 QARQASPAWK
::::::::::
XP_005 QARQASPAWK
180
>>NP_001305872 (OMIM: 143170) male-enhanced antigen 1 is (172 aa)
initn: 1178 init1: 1178 opt: 1178 Z-score: 1112.8 bits: 212.4 E(85289): 3e-55
Smith-Waterman score: 1178; 100.0% identity (100.0% similar) in 172 aa overlap (14-185:1-172)
10 20 30 40 50 60
pF1KB6 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
10 20 30 40
70 80 90 100 110 120
pF1KB6 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
110 120 130 140 150 160
pF1KB6 SPAWK
:::::
NP_001 SPAWK
170
>>NP_001305871 (OMIM: 143170) male-enhanced antigen 1 is (172 aa)
initn: 1178 init1: 1178 opt: 1178 Z-score: 1112.8 bits: 212.4 E(85289): 3e-55
Smith-Waterman score: 1178; 100.0% identity (100.0% similar) in 172 aa overlap (14-185:1-172)
10 20 30 40 50 60
pF1KB6 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
10 20 30 40
70 80 90 100 110 120
pF1KB6 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
110 120 130 140 150 160
pF1KB6 SPAWK
:::::
NP_001 SPAWK
170
>>XP_016866357 (OMIM: 143170) PREDICTED: male-enhanced a (142 aa)
initn: 838 init1: 838 opt: 840 Z-score: 799.3 bits: 154.2 E(85289): 8.8e-38
Smith-Waterman score: 840; 93.2% identity (96.2% similar) in 132 aa overlap (14-145:1-132)
10 20 30 40 50 60
pF1KB6 MGPERHLSGAPARMATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATVVLGGDTMGPERIFPNQTEELGHQGPSEGTGDWSSEEPEEEQEE
10 20 30 40
70 80 90 100 110 120
pF1KB6 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGSGPAGYSYQPLNQDPEQEEVELAPVGDGDVVADIQDRIQALGLHLPDPPLESEDEDEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 GATALNNHSSIPMDPEHVELVKRTMAGVSLPAPGVPAWAREISDAQWEDVVQKALQARQA
::::::::::::::: .. .: .
XP_016 GATALNNHSSIPMDPGMYNVQNRRLPQEERRDGES
110 120 130 140
185 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:27:22 2016 done: Fri Nov 4 14:27:23 2016
Total Scan time: 6.890 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]