FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6814, 185 aa
  1>>>pF1KB6814 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2164+/-0.000737; mu= 12.8742+/- 0.045
 mean_var=59.8949+/-11.482, 0's: 0 Z-trim(108.1): 10  B-trim: 0 in 0/52
 Lambda= 0.165722
 statistics sampled from 9957 (9966) to 9957 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.306), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS43273.1 ANAPC10 gene_id:10393|Hs108|chr4       ( 185) 1261 309.5 7.5e-85


>>CCDS43273.1 ANAPC10 gene_id:10393|Hs108|chr4            (185 aa)
 initn: 1261 init1: 1261 opt: 1261  Z-score: 1636.8  bits: 309.5 E(32554): 7.5e-85
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
              130       140       150       160       170       180

            
pF1KB6 YRSIR
       :::::
CCDS43 YRSIR
            




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:10:06 2016 done: Sat Nov  5 20:10:06 2016
 Total Scan time:  1.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]