Result of FASTA (omim) for
pF1KB6814
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6814, 185 aa
1>>>pF1KB6814 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0608+/-0.000326; mu= 14.0328+/- 0.020
mean_var=60.6720+/-11.748, 0's: 0 Z-trim(115.4): 61 B-trim: 0 in 0/52
Lambda= 0.164657
statistics sampled from 25797 (25858) to 25797 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.303), width: 16
Scan time: 5.580
The best scores are: opt bits E(85289)
XP_011529826 (OMIM: 613745) PREDICTED: anaphase-pr ( 185) 1261 307.6 7.6e-84
NP_001243637 (OMIM: 613745) anaphase-promoting com ( 185) 1261 307.6 7.6e-84
NP_001243635 (OMIM: 613745) anaphase-promoting com ( 185) 1261 307.6 7.6e-84
NP_055700 (OMIM: 613745) anaphase-promoting comple ( 185) 1261 307.6 7.6e-84
NP_001243636 (OMIM: 613745) anaphase-promoting com ( 185) 1261 307.6 7.6e-84
XP_016863129 (OMIM: 613745) PREDICTED: anaphase-pr ( 196) 1261 307.6 8e-84
NP_001243638 (OMIM: 613745) anaphase-promoting com ( 196) 1261 307.6 8e-84
XP_016863128 (OMIM: 613745) PREDICTED: anaphase-pr ( 219) 1261 307.6 8.8e-84
NP_001305296 (OMIM: 613745) anaphase-promoting com ( 219) 1261 307.6 8.8e-84
XP_016863127 (OMIM: 613745) PREDICTED: anaphase-pr ( 223) 1261 307.6 8.9e-84
XP_016863133 (OMIM: 613745) PREDICTED: anaphase-pr ( 114) 747 185.3 2.9e-47
NP_001243639 (OMIM: 613745) anaphase-promoting com ( 114) 747 185.3 2.9e-47
NP_001243640 (OMIM: 613745) anaphase-promoting com ( 114) 747 185.3 2.9e-47
XP_016863132 (OMIM: 613745) PREDICTED: anaphase-pr ( 152) 747 185.4 3.7e-47
XP_011529834 (OMIM: 613745) PREDICTED: anaphase-pr ( 110) 745 184.9 3.9e-47
XP_011529831 (OMIM: 613745) PREDICTED: anaphase-pr ( 148) 745 184.9 5e-47
XP_011529832 (OMIM: 613745) PREDICTED: anaphase-pr ( 126) 743 184.4 6.1e-47
XP_016863131 (OMIM: 613745) PREDICTED: anaphase-pr ( 153) 743 184.5 7.1e-47
XP_011529829 (OMIM: 613745) PREDICTED: anaphase-pr ( 157) 743 184.5 7.3e-47
XP_011529828 (OMIM: 613745) PREDICTED: anaphase-pr ( 164) 743 184.5 7.6e-47
XP_016863130 (OMIM: 613745) PREDICTED: anaphase-pr ( 176) 743 184.5 8e-47
XP_011529827 (OMIM: 613745) PREDICTED: anaphase-pr ( 180) 743 184.5 8.2e-47
NP_001243641 (OMIM: 613745) anaphase-promoting com ( 83) 477 121.1 4.5e-28
XP_011529833 (OMIM: 613745) PREDICTED: anaphase-pr ( 121) 477 121.2 6.2e-28
XP_011513323 (OMIM: 273750,609577) PREDICTED: cull ( 989) 168 48.3 4.4e-05
NP_055595 (OMIM: 273750,609577) cullin-7 isoform 2 (1698) 168 48.4 7e-05
XP_016867028 (OMIM: 273750,609577) PREDICTED: cull (1702) 168 48.5 7e-05
XP_016867027 (OMIM: 273750,609577) PREDICTED: cull (1711) 168 48.5 7e-05
XP_016867026 (OMIM: 273750,609577) PREDICTED: cull (1730) 168 48.5 7.1e-05
XP_006715348 (OMIM: 273750,609577) PREDICTED: cull (1734) 168 48.5 7.1e-05
XP_016867025 (OMIM: 273750,609577) PREDICTED: cull (1743) 168 48.5 7.1e-05
XP_005249560 (OMIM: 273750,609577) PREDICTED: cull (1750) 168 48.5 7.1e-05
XP_011513322 (OMIM: 273750,609577) PREDICTED: cull (1754) 168 48.5 7.2e-05
XP_016867024 (OMIM: 273750,609577) PREDICTED: cull (1763) 168 48.5 7.2e-05
NP_001161842 (OMIM: 273750,609577) cullin-7 isofor (1782) 168 48.5 7.3e-05
XP_011513321 (OMIM: 273750,609577) PREDICTED: cull (1786) 168 48.5 7.3e-05
XP_016867023 (OMIM: 273750,609577) PREDICTED: cull (1791) 168 48.5 7.3e-05
XP_016867022 (OMIM: 273750,609577) PREDICTED: cull (1795) 168 48.5 7.3e-05
XP_016878186 (OMIM: 176270,227220,605837,615516) P (2556) 165 47.8 0.00016
XP_016878187 (OMIM: 176270,227220,605837,615516) P (2556) 165 47.8 0.00016
XP_011520435 (OMIM: 176270,227220,605837,615516) P (3749) 165 47.9 0.00022
XP_011520433 (OMIM: 176270,227220,605837,615516) P (4673) 165 48.0 0.00027
XP_006720790 (OMIM: 176270,227220,605837,615516) P (4748) 165 48.0 0.00027
XP_005268333 (OMIM: 176270,227220,605837,615516) P (4796) 165 48.0 0.00027
XP_016878184 (OMIM: 176270,227220,605837,615516) P (4796) 165 48.0 0.00027
XP_016878185 (OMIM: 176270,227220,605837,615516) P (4796) 165 48.0 0.00027
XP_006720789 (OMIM: 176270,227220,605837,615516) P (4829) 165 48.0 0.00027
NP_004658 (OMIM: 176270,227220,605837,615516) E3 u (4834) 165 48.0 0.00027
XP_011512732 (OMIM: 607489) PREDICTED: cullin-9 is (1403) 153 44.8 0.0007
XP_011512731 (OMIM: 607489) PREDICTED: cullin-9 is (1834) 153 44.9 0.00088
>>XP_011529826 (OMIM: 613745) PREDICTED: anaphase-promot (185 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1626.3 bits: 307.6 E(85289): 7.6e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
130 140 150 160 170 180
pF1KB6 YRSIR
:::::
XP_011 YRSIR
>>NP_001243637 (OMIM: 613745) anaphase-promoting complex (185 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1626.3 bits: 307.6 E(85289): 7.6e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
130 140 150 160 170 180
pF1KB6 YRSIR
:::::
NP_001 YRSIR
>>NP_001243635 (OMIM: 613745) anaphase-promoting complex (185 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1626.3 bits: 307.6 E(85289): 7.6e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
130 140 150 160 170 180
pF1KB6 YRSIR
:::::
NP_001 YRSIR
>>NP_055700 (OMIM: 613745) anaphase-promoting complex su (185 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1626.3 bits: 307.6 E(85289): 7.6e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
130 140 150 160 170 180
pF1KB6 YRSIR
:::::
NP_055 YRSIR
>>NP_001243636 (OMIM: 613745) anaphase-promoting complex (185 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1626.3 bits: 307.6 E(85289): 7.6e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
130 140 150 160 170 180
pF1KB6 YRSIR
:::::
NP_001 YRSIR
>>XP_016863129 (OMIM: 613745) PREDICTED: anaphase-promot (196 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1625.9 bits: 307.6 E(85289): 8e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:12-196)
10 20 30 40
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDN
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGGVKETNILKMTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 LETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 QLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGK
130 140 150 160 170 180
170 180
pF1KB6 FPRCTTIDFMMYRSIR
::::::::::::::::
XP_016 FPRCTTIDFMMYRSIR
190
>>NP_001243638 (OMIM: 613745) anaphase-promoting complex (196 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1625.9 bits: 307.6 E(85289): 8e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:12-196)
10 20 30 40
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDN
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGGVKETNILKMTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 LETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 QLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGK
130 140 150 160 170 180
170 180
pF1KB6 FPRCTTIDFMMYRSIR
::::::::::::::::
NP_001 FPRCTTIDFMMYRSIR
190
>>XP_016863128 (OMIM: 613745) PREDICTED: anaphase-promot (219 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1625.2 bits: 307.6 E(85289): 8.8e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:35-219)
10 20 30
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAV
::::::::::::::::::::::::::::::
XP_016 FLEWASYSLQNLEAIFLTLSSMVRAYNILKMTTPNKTPPGADPKQLERTGTVREIGSQAV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 WSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYT
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 PSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRD
130 140 150 160 170 180
160 170 180
pF1KB6 THMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR
:::::::::::::::::::::::::::::::::::
XP_016 THMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR
190 200 210
>>NP_001305296 (OMIM: 613745) anaphase-promoting complex (219 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1625.2 bits: 307.6 E(85289): 8.8e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:35-219)
10 20 30
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAV
::::::::::::::::::::::::::::::
NP_001 FLEWASYSLQNLEAIFLTLSSMVRAYNILKMTTPNKTPPGADPKQLERTGTVREIGSQAV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 WSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYT
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 PSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRD
130 140 150 160 170 180
160 170 180
pF1KB6 THMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR
:::::::::::::::::::::::::::::::::::
NP_001 THMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR
190 200 210
>>XP_016863127 (OMIM: 613745) PREDICTED: anaphase-promot (223 aa)
initn: 1261 init1: 1261 opt: 1261 Z-score: 1625.1 bits: 307.6 E(85289): 8.9e-84
Smith-Waterman score: 1261; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:39-223)
10 20 30
pF1KB6 MTTPNKTPPGADPKQLERTGTVREIGSQAV
::::::::::::::::::::::::::::::
XP_016 CSTPLAKPAAGGAENLSFGKQPGLETNILKMTTPNKTPPGADPKQLERTGTVREIGSQAV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 WSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYT
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 PSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRD
130 140 150 160 170 180
160 170 180
pF1KB6 THMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR
:::::::::::::::::::::::::::::::::::
XP_016 THMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR
190 200 210 220
185 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:10:07 2016 done: Sat Nov 5 20:10:07 2016
Total Scan time: 5.580 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]