FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6816, 185 aa
  1>>>pF1KB6816 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4842+/-0.000313; mu= 8.1945+/- 0.020
 mean_var=98.7227+/-19.695, 0's: 0 Z-trim(118.2): 8  B-trim: 0 in 0/52
 Lambda= 0.129082
 statistics sampled from 30884 (30889) to 30884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.362), width:  16
 Scan time:  5.260

The best scores are:                                      opt bits E(85289)
NP_001881 (OMIM: 115450) alpha-S1-casein isoform 1 ( 185) 1243 241.0 8.2e-64
XP_006714152 (OMIM: 115450) PREDICTED: alpha-S1-ca ( 184) 1224 237.5 9.5e-63
XP_006714153 (OMIM: 115450) PREDICTED: alpha-S1-ca ( 177) 1167 226.8 1.4e-59
XP_006714154 (OMIM: 115450) PREDICTED: alpha-S1-ca ( 176)  826 163.3 1.9e-40
NP_001020275 (OMIM: 115450) alpha-S1-casein isofor ( 176)  824 163.0 2.4e-40


>>NP_001881 (OMIM: 115450) alpha-S1-casein isoform 1 pre  (185 aa)
 initn: 1243 init1: 1243 opt: 1243  Z-score: 1266.6  bits: 241.0 E(85289): 8.2e-64
Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB6 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
              130       140       150       160       170       180

            
pF1KB6 VMLQW
       :::::
NP_001 VMLQW
            

>>XP_006714152 (OMIM: 115450) PREDICTED: alpha-S1-casein  (184 aa)
 initn: 902 init1: 902 opt: 1224  Z-score: 1247.5  bits: 237.5 E(85289): 9.5e-63
Smith-Waterman score: 1224; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-184)

               10        20        30        40        50        60
pF1KB6 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
XP_006 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNR-RNILREKQ
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB6 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB6 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
     120       130       140       150       160       170         

            
pF1KB6 VMLQW
       :::::
XP_006 VMLQW
     180    

>>XP_006714153 (OMIM: 115450) PREDICTED: alpha-S1-casein  (177 aa)
 initn: 787 init1: 787 opt: 1167  Z-score: 1190.4  bits: 226.8 E(85289): 1.4e-59
Smith-Waterman score: 1167; 95.7% identity (95.7% similar) in 185 aa overlap (1-185:1-177)

               10        20        30        40        50        60
pF1KB6 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
       :::::        :::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDEIK--------NCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
                       70        80        90       100       110  

              130       140       150       160       170       180
pF1KB6 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
            120       130       140       150       160       170  

            
pF1KB6 VMLQW
       :::::
XP_006 VMLQW
            

>>XP_006714154 (OMIM: 115450) PREDICTED: alpha-S1-casein  (176 aa)
 initn: 1102 init1: 780 opt: 826  Z-score: 847.3  bits: 163.3 E(85289): 1.9e-40
Smith-Waterman score: 1148; 95.1% identity (95.1% similar) in 185 aa overlap (1-185:1-176)

               10        20        30        40        50        60
pF1KB6 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
XP_006 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNR-RNILREKQ
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB6 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
       :::::        :::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDEIK--------NCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
      60                70        80        90       100       110 

              130       140       150       160       170       180
pF1KB6 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
             120       130       140       150       160       170 

            
pF1KB6 VMLQW
       :::::
XP_006 VMLQW
            

>>NP_001020275 (OMIM: 115450) alpha-S1-casein isoform 2   (176 aa)
 initn: 927 init1: 605 opt: 824  Z-score: 845.2  bits: 163.0 E(85289): 2.4e-40
Smith-Waterman score: 1146; 95.1% identity (95.1% similar) in 185 aa overlap (1-185:1-176)

               10        20        30        40        50        60
pF1KB6 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNR-RNILREKQ
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB6 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
       :::::::::::::::::::::::::::::::::        :::::::::::::::::::
NP_001 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEE--------QFCRLNEYNQLQLQAAHAQ
      60        70        80        90               100       110 

              130       140       150       160       170       180
pF1KB6 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
             120       130       140       150       160       170 

            
pF1KB6 VMLQW
       :::::
NP_001 VMLQW
            




185 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:14:11 2016 done: Sat Nov  5 04:14:11 2016
 Total Scan time:  5.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]