FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6818, 186 aa
  1>>>pF1KB6818 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0786+/-0.000673; mu= 13.4615+/- 0.040
 mean_var=56.4291+/-11.271, 0's: 0 Z-trim(109.1): 13  B-trim: 0 in 0/50
 Lambda= 0.170735
 statistics sampled from 10684 (10690) to 10684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.328), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS13136.1 RBBP9 gene_id:10741|Hs108|chr20        ( 186) 1290 325.4 1.2e-89


>>CCDS13136.1 RBBP9 gene_id:10741|Hs108|chr20             (186 aa)
 initn: 1290 init1: 1290 opt: 1290  Z-score: 1722.7  bits: 325.4 E(32554): 1.2e-89
Smith-Waterman score: 1290; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB6 MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKS
              130       140       150       160       170       180

             
pF1KB6 LLKVPA
       ::::::
CCDS13 LLKVPA
             




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:14:49 2016 done: Sat Nov  5 00:14:49 2016
 Total Scan time:  1.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]