FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6818, 186 aa
  1>>>pF1KB6818 186 - 186 aa - 186 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8024+/-0.000317; mu= 15.2832+/- 0.020
 mean_var=60.0967+/-12.067, 0's: 0 Z-trim(115.9): 3  B-trim: 0 in 0/54
 Lambda= 0.165443
 statistics sampled from 26750 (26753) to 26750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.314), width:  16
 Scan time:  4.560

The best scores are:                                      opt bits E(85289)
NP_006597 (OMIM: 602908) putative hydrolase RBBP9  ( 186) 1290 315.8 2.5e-86
XP_005260709 (OMIM: 602908) PREDICTED: putative hy ( 128)  871 215.7 2.3e-56


>>NP_006597 (OMIM: 602908) putative hydrolase RBBP9 [Hom  (186 aa)
 initn: 1290 init1: 1290 opt: 1290  Z-score: 1671.0  bits: 315.8 E(85289): 2.5e-86
Smith-Waterman score: 1290; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB6 MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKS
              130       140       150       160       170       180

             
pF1KB6 LLKVPA
       ::::::
NP_006 LLKVPA
             

>>XP_005260709 (OMIM: 602908) PREDICTED: putative hydrol  (128 aa)
 initn: 871 init1: 871 opt: 871  Z-score: 1132.8  bits: 215.7 E(85289): 2.3e-56
Smith-Waterman score: 871; 100.0% identity (100.0% similar) in 128 aa overlap (59-186:1-128)

       30        40        50        60        70        80        
pF1KB6 KELEKIPGFQCLAKNMPDPITARESIWLPFMETELHCDEKTIIIGHSSGAIAAMRYAETH
                                     ::::::::::::::::::::::::::::::
XP_005                               METELHCDEKTIIIGHSSGAIAAMRYAETH
                                             10        20        30

       90       100       110       120       130       140        
pF1KB6 RVYAIVLVSAYTSDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RVYAIVLVSAYTSDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQQE
               40        50        60        70        80        90

      150       160       170       180      
pF1KB6 VADRLETKLHKFTDCGHFQNTEFHELITVVKSLLKVPA
       ::::::::::::::::::::::::::::::::::::::
XP_005 VADRLETKLHKFTDCGHFQNTEFHELITVVKSLLKVPA
              100       110       120        




186 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:14:49 2016 done: Sat Nov  5 00:14:50 2016
 Total Scan time:  4.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]