FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6819, 162 aa
  1>>>pF1KB6819 162 - 162 aa - 162 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1669+/-0.000784; mu= 12.3186+/- 0.047
 mean_var=52.5691+/-10.177, 0's: 0 Z-trim(106.2): 17  B-trim: 0 in 0/49
 Lambda= 0.176892
 statistics sampled from 8815 (8821) to 8815 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.271), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS3755.1 IL15 gene_id:3600|Hs108|chr4            ( 162) 1054 276.5 4.9e-75
CCDS3756.1 IL15 gene_id:3600|Hs108|chr4            ( 135)  806 213.2 4.7e-56


>>CCDS3755.1 IL15 gene_id:3600|Hs108|chr4                 (162 aa)
 initn: 1054 init1: 1054 opt: 1054  Z-score: 1460.6  bits: 276.5 E(32554): 4.9e-75
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KB6 MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN
               70        80        90       100       110       120

              130       140       150       160  
pF1KB6 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS37 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
              130       140       150       160  

>>CCDS3756.1 IL15 gene_id:3600|Hs108|chr4                 (135 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 1119.9  bits: 213.2 E(32554): 4.7e-56
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (38-162:11-135)

        10        20        30        40        50        60       
pF1KB6 LRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKIEDLIQSM
                                     ::::::::::::::::::::::::::::::
CCDS37                     MVLGTIDLCSCFSAGLPKTEANWVNVISDLKKIEDLIQSM
                                   10        20        30        40

        70        80        90       100       110       120       
pF1KB6 HIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANNSLSSNGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 HIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANNSLSSNGN
               50        60        70        80        90       100

       130       140       150       160  
pF1KB6 VTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
       :::::::::::::::::::::::::::::::::::
CCDS37 VTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
              110       120       130     




162 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:01:30 2016 done: Sat Nov  5 04:01:31 2016
 Total Scan time:  1.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]