FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6821, 163 aa
  1>>>pF1KB6821 163 - 163 aa - 163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0504+/-0.00082; mu= 10.4183+/- 0.049
 mean_var=105.7256+/-20.838, 0's: 0 Z-trim(110.2): 14  B-trim: 264 in 2/50
 Lambda= 0.124734
 statistics sampled from 11416 (11425) to 11416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.351), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS10152.1 RSL24D1 gene_id:51187|Hs108|chr15      ( 163) 1117 210.6 3.4e-55


>>CCDS10152.1 RSL24D1 gene_id:51187|Hs108|chr15           (163 aa)
 initn: 1117 init1: 1117 opt: 1117  Z-score: 1104.4  bits: 210.6 E(32554): 3.4e-55
Smith-Waterman score: 1117; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB6 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
               70        80        90       100       110       120

              130       140       150       160   
pF1KB6 VQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDAP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS10 VQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDAP
              130       140       150       160   




163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:26:32 2016 done: Sat Nov  5 00:26:33 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]