FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6821, 163 aa
  1>>>pF1KB6821 163 - 163 aa - 163 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4179+/-0.00036; mu= 8.2912+/- 0.022
 mean_var=112.7741+/-22.536, 0's: 0 Z-trim(117.4): 12  B-trim: 1453 in 3/50
 Lambda= 0.120773
 statistics sampled from 29433 (29445) to 29433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.345), width:  16
 Scan time:  4.170

The best scores are:                                      opt bits E(85289)
NP_057388 (OMIM: 613262) probable ribosome biogene ( 163) 1117 204.5   6e-53
NP_000977 (OMIM: 604180) 60S ribosomal protein L24 ( 157)  271 57.1 1.4e-08


>>NP_057388 (OMIM: 613262) probable ribosome biogenesis   (163 aa)
 initn: 1117 init1: 1117 opt: 1117  Z-score: 1071.5  bits: 204.5 E(85289): 6e-53
Smith-Waterman score: 1117; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB6 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
               70        80        90       100       110       120

              130       140       150       160   
pF1KB6 VQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDAP
       :::::::::::::::::::::::::::::::::::::::::::
NP_057 VQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDAP
              130       140       150       160   

>>NP_000977 (OMIM: 604180) 60S ribosomal protein L24 [Ho  (157 aa)
 initn: 199 init1: 173 opt: 271  Z-score: 275.1  bits: 57.1 E(85289): 1.4e-08
Smith-Waterman score: 271; 31.4% identity (63.5% similar) in 156 aa overlap (1-154:1-147)

               10        20        30        40        50        60
pF1KB6 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG
       :..: : : .  ::::::  ..:.: :::.: ..::.. : .:::::.. ::  .:.   
NP_000 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK
               10        20        30        40        50        60

               70         80        90        100       110        
pF1KB6 KELTVDNSFEFEKRRNE-PIKYQRELWNKTI-DAMKRVEEIKQKRQAKFIMNRLKKNKEL
       :     .: :..:.:..  .:.:: . . .. : : . ..  . :.:.   . ..  :: 
NP_000 K----GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQR-EQAIRAAKEA
                   70        80        90       100        110     

      120       130       140       150       160    
pF1KB6 QKVQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDAP 
       .:... .. :  .   .::  .  ::   :.:. ..          
NP_000 KKAKQASK-KTAMAAAKAPTKAAPKQ---KIVKPVKVSAPRVGGKR
         120        130       140          150       




163 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:26:33 2016 done: Sat Nov  5 00:26:34 2016
 Total Scan time:  4.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]