FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6822, 186 aa
  1>>>pF1KB6822 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8096+/-0.000833; mu= 10.6264+/- 0.050
 mean_var=77.1962+/-15.281, 0's: 0 Z-trim(108.2): 11  B-trim: 0 in 0/49
 Lambda= 0.145974
 statistics sampled from 10057 (10066) to 10057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.309), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS6560.1 DCTN3 gene_id:11258|Hs108|chr9          ( 186) 1181 257.7   3e-69
CCDS6561.1 DCTN3 gene_id:11258|Hs108|chr9          ( 176)  876 193.4 6.2e-50
CCDS65029.1 DCTN3 gene_id:11258|Hs108|chr9         ( 176)  872 192.6 1.1e-49
CCDS65028.1 DCTN3 gene_id:11258|Hs108|chr9         ( 158)  573 129.6 9.2e-31


>>CCDS6560.1 DCTN3 gene_id:11258|Hs108|chr9               (186 aa)
 initn: 1181 init1: 1181 opt: 1181  Z-score: 1356.7  bits: 257.7 E(32554): 3e-69
Smith-Waterman score: 1181; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB6 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ
              130       140       150       160       170       180

             
pF1KB6 VKPAEE
       ::::::
CCDS65 VKPAEE
             

>>CCDS6561.1 DCTN3 gene_id:11258|Hs108|chr9               (176 aa)
 initn: 866 init1: 866 opt: 876  Z-score: 1009.9  bits: 193.4 E(32554): 6.2e-50
Smith-Waterman score: 876; 91.6% identity (95.5% similar) in 154 aa overlap (1-153:1-154)

               10        20        30        40        50        60
pF1KB6 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
               70        80        90       100       110       120

              130        140       150       160       170         
pF1KB6 EHAARLQRLAQIHIQQQ-DQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAAT
       :::::::::::::::::    : . .:. .:.:.                          
CCDS65 EHAARLQRLAQIHIQQQAPWGVGVRDEAGSLVEDVGFAQFLSVLHFGPTGPVCGNH    
              130       140       150       160       170          

     180      
pF1KB6 QVKPAEE

>>CCDS65029.1 DCTN3 gene_id:11258|Hs108|chr9              (176 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 1005.3  bits: 192.6 E(32554): 1.1e-49
Smith-Waterman score: 1033; 90.9% identity (92.5% similar) in 186 aa overlap (1-186:1-176)

               10        20        30        40        50        60
pF1KB6 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ
       :::::::::::::::::   . .:         ::.: ::::::::::::::::::::::
CCDS65 EHAARLQRLAQIHIQQQIPILTLT---------YNQT-MLLSKQFVQWDELLCQLEAATQ
              130       140                 150       160       170

             
pF1KB6 VKPAEE
       ::::::
CCDS65 VKPAEE
             

>>CCDS65028.1 DCTN3 gene_id:11258|Hs108|chr9              (158 aa)
 initn: 582 init1: 566 opt: 573  Z-score: 665.7  bits: 129.6 E(32554): 9.2e-31
Smith-Waterman score: 945; 84.9% identity (84.9% similar) in 186 aa overlap (1-186:1-158)

               10        20        30        40        50        60
pF1KB6 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
       :::::::::::::::::::::::::::::                            :::
CCDS65 IEDLIKYLDPEYIDRIAIPDASKLQFILA----------------------------AVP
               70        80                                    90  

              130       140       150       160       170       180
pF1KB6 EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ
            100       110       120       130       140       150  

             
pF1KB6 VKPAEE
       ::::::
CCDS65 VKPAEE
             




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:27:02 2016 done: Sat Nov  5 00:27:03 2016
 Total Scan time:  1.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]