FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6828, 188 aa
  1>>>pF1KB6828 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1272+/-0.000779; mu= 13.5929+/- 0.047
 mean_var=55.3911+/-10.646, 0's: 0 Z-trim(106.7): 9  B-trim: 75 in 1/49
 Lambda= 0.172327
 statistics sampled from 9150 (9153) to 9150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS3958.1 MOCS2 gene_id:4338|Hs108|chr5           ( 188) 1211 308.8 1.3e-84


>>CCDS3958.1 MOCS2 gene_id:4338|Hs108|chr5                (188 aa)
 initn: 1211 init1: 1211 opt: 1211  Z-score: 1632.7  bits: 308.8 E(32554): 1.3e-84
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB6 MSSLEISSSCFSLETKLPLSPPLVEDSAFEPSRKDMDEVEEKSKDVINFTAEKLSVDEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MSSLEISSSCFSLETKLPLSPPLVEDSAFEPSRKDMDEVEEKSKDVINFTAEKLSVDEVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 QLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYEESSTWKGNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYEESSTWKGNK
              130       140       150       160       170       180

               
pF1KB6 ECFWASNS
       ::::::::
CCDS39 ECFWASNS
               




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:00:03 2016 done: Fri Nov  4 15:00:03 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]