FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6828, 188 aa
  1>>>pF1KB6828 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1203+/-0.000344; mu= 13.6826+/- 0.021
 mean_var=57.5244+/-10.985, 0's: 0 Z-trim(114.0): 8  B-trim: 39 in 1/56
 Lambda= 0.169102
 statistics sampled from 23572 (23580) to 23572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.276), width:  16
 Scan time:  4.970

The best scores are:                                      opt bits E(85289)
NP_004522 (OMIM: 252160,603708) molybdopterin synt ( 188) 1211 303.4 1.4e-82


>>NP_004522 (OMIM: 252160,603708) molybdopterin synthase  (188 aa)
 initn: 1211 init1: 1211 opt: 1211  Z-score: 1603.3  bits: 303.4 E(85289): 1.4e-82
Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB6 MSSLEISSSCFSLETKLPLSPPLVEDSAFEPSRKDMDEVEEKSKDVINFTAEKLSVDEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSSLEISSSCFSLETKLPLSPPLVEDSAFEPSRKDMDEVEEKSKDVINFTAEKLSVDEVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYEESSTWKGNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYEESSTWKGNK
              130       140       150       160       170       180

               
pF1KB6 ECFWASNS
       ::::::::
NP_004 ECFWASNS
               




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:00:04 2016 done: Fri Nov  4 15:00:05 2016
 Total Scan time:  4.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]