FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6830, 189 aa
  1>>>pF1KB6830 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3103+/-0.000591; mu= 14.0861+/- 0.036
 mean_var=75.5227+/-15.124, 0's: 0 Z-trim(113.3): 9  B-trim: 42 in 1/49
 Lambda= 0.147583
 statistics sampled from 13933 (13937) to 13933 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.428), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS8916.1 IL23A gene_id:51561|Hs108|chr12         ( 189) 1313 287.8 2.7e-78


>>CCDS8916.1 IL23A gene_id:51561|Hs108|chr12              (189 aa)
 initn: 1313 init1: 1313 opt: 1313  Z-score: 1519.2  bits: 287.8 E(32554): 2.7e-78
Smith-Waterman score: 1313; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MLGSRAVMLLLLLPWTAQGRAVPGGSSPAWTQCQQLSQKLCTLAWSAHPLVGHMDLREEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MLGSRAVMLLLLLPWTAQGRAVPGGSSPAWTQCQQLSQKLCTLAWSAHPLVGHMDLREEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DEETTNDVPHIQCGDGCDPQGLRDNSQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DEETTNDVPHIQCGDGCDPQGLRDNSQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VGQLHASLLGLSQLLQPEGHHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VGQLHASLLGLSQLLQPEGHHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARVF
              130       140       150       160       170       180

                
pF1KB6 AHGAATLSP
       :::::::::
CCDS89 AHGAATLSP
                




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:06:34 2016 done: Sat Nov  5 14:06:35 2016
 Total Scan time:  2.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]