FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6830, 189 aa
  1>>>pF1KB6830 189 - 189 aa - 189 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5103+/-0.000278; mu= 12.9405+/- 0.017
 mean_var=77.3698+/-15.930, 0's: 0 Z-trim(120.1): 7  B-trim: 226 in 1/54
 Lambda= 0.145810
 statistics sampled from 34851 (34858) to 34851 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.409), width:  16
 Scan time:  6.280

The best scores are:                                      opt bits E(85289)
XP_011536779 (OMIM: 605580) PREDICTED: interleukin ( 189) 1313 284.7 6.2e-77
NP_057668 (OMIM: 605580) interleukin-23 subunit al ( 189) 1313 284.7 6.2e-77


>>XP_011536779 (OMIM: 605580) PREDICTED: interleukin-23   (189 aa)
 initn: 1313 init1: 1313 opt: 1313  Z-score: 1502.1  bits: 284.7 E(85289): 6.2e-77
Smith-Waterman score: 1313; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MLGSRAVMLLLLLPWTAQGRAVPGGSSPAWTQCQQLSQKLCTLAWSAHPLVGHMDLREEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLGSRAVMLLLLLPWTAQGRAVPGGSSPAWTQCQQLSQKLCTLAWSAHPLVGHMDLREEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DEETTNDVPHIQCGDGCDPQGLRDNSQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEETTNDVPHIQCGDGCDPQGLRDNSQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VGQLHASLLGLSQLLQPEGHHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGQLHASLLGLSQLLQPEGHHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARVF
              130       140       150       160       170       180

                
pF1KB6 AHGAATLSP
       :::::::::
XP_011 AHGAATLSP
                

>>NP_057668 (OMIM: 605580) interleukin-23 subunit alpha   (189 aa)
 initn: 1313 init1: 1313 opt: 1313  Z-score: 1502.1  bits: 284.7 E(85289): 6.2e-77
Smith-Waterman score: 1313; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MLGSRAVMLLLLLPWTAQGRAVPGGSSPAWTQCQQLSQKLCTLAWSAHPLVGHMDLREEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLGSRAVMLLLLLPWTAQGRAVPGGSSPAWTQCQQLSQKLCTLAWSAHPLVGHMDLREEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DEETTNDVPHIQCGDGCDPQGLRDNSQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DEETTNDVPHIQCGDGCDPQGLRDNSQFCLQRIHQGLIFYEKLLGSDIFTGEPSLLPDSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VGQLHASLLGLSQLLQPEGHHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VGQLHASLLGLSQLLQPEGHHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARVF
              130       140       150       160       170       180

                
pF1KB6 AHGAATLSP
       :::::::::
NP_057 AHGAATLSP
                




189 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:06:35 2016 done: Sat Nov  5 14:06:36 2016
 Total Scan time:  6.280 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]