FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6831, 166 aa
  1>>>pF1KB6831 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4833+/-0.000762; mu= 8.2342+/- 0.046
 mean_var=117.3126+/-23.153, 0's: 0 Z-trim(112.9): 46  B-trim: 283 in 1/52
 Lambda= 0.118414
 statistics sampled from 13560 (13606) to 13560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.418), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS5368.1 FERD3L gene_id:222894|Hs108|chr7        ( 166) 1092 196.3 7.1e-51


>>CCDS5368.1 FERD3L gene_id:222894|Hs108|chr7             (166 aa)
 initn: 1092 init1: 1092 opt: 1092  Z-score: 1026.8  bits: 196.3 E(32554): 7.1e-51
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB6 MAAYPESCVDTTVLDFVADLSLASPRRPLLCDFAPGVSLGDPALALREGRPRRMARFEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAAYPESCVDTTVLDFVADLSLASPRRPLLCDFAPGVSLGDPALALREGRPRRMARFEEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DPEEEECEVDQGDGEEEEEEERGRGVSLLGRPKRKRVITYAQRQAANIRERKRMFNLNEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DPEEEECEVDQGDGEEEEEEERGRGVSLLGRPKRKRVITYAQRQAANIRERKRMFNLNEA
               70        80        90       100       110       120

              130       140       150       160      
pF1KB6 FDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLESCEKKESG
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLESCEKKESG
              130       140       150       160      




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:07:24 2016 done: Sat Nov  5 04:07:24 2016
 Total Scan time:  2.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]