Result of FASTA (ccds) for
pF1KB6833
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6833, 169 aa
1>>>pF1KB6833 169 - 169 aa - 169 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8386+/-0.00066; mu= 14.3871+/- 0.040
mean_var=54.0415+/-10.655, 0's: 0 Z-trim(109.5): 19 B-trim: 55 in 1/49
Lambda= 0.174466
statistics sampled from 10902 (10919) to 10902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.335), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 ( 169) 1138 293.8 3.4e-80
CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 ( 152) 726 190.1 5.1e-49
CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 ( 177) 726 190.1 5.8e-49
CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 ( 152) 711 186.3 7e-48
CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 ( 267) 711 186.4 1.1e-47
CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 ( 187) 652 171.5 2.5e-43
CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 ( 117) 479 127.8 2.1e-30
CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 ( 82) 356 96.8 3.3e-21
CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 ( 153) 312 85.9 1.2e-17
CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 ( 186) 251 70.5 6e-13
CCDS2763.1 NME6 gene_id:10201|Hs108|chr3 ( 194) 251 70.5 6.2e-13
CCDS44274.1 NME7 gene_id:29922|Hs108|chr1 ( 340) 250 70.4 1.2e-12
CCDS1277.1 NME7 gene_id:29922|Hs108|chr1 ( 376) 250 70.4 1.3e-12
>>CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 (169 aa)
initn: 1138 init1: 1138 opt: 1138 Z-score: 1553.2 bits: 293.8 E(32554): 3.4e-80
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)
10 20 30 40 50 60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
70 80 90 100 110 120
130 140 150 160
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
130 140 150 160
>>CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 (152 aa)
initn: 726 init1: 726 opt: 726 Z-score: 993.5 bits: 190.1 E(32554): 5.1e-49
Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (22-169:5-152)
10 20 30 40 50 60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
::::.:.::::::: :::::..:::.:::.::.::..::
CCDS11 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQA
10 20 30 40
70 80 90 100 110 120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: :::::. :::
CCDS11 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
50 60 70 80 90 100
130 140 150 160
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
:::::::.::.:.::::::::::..::.:::. .::. . . : .:.::
CCDS11 IRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
110 120 130 140 150
>>CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 (177 aa)
initn: 726 init1: 726 opt: 726 Z-score: 992.5 bits: 190.1 E(32554): 5.8e-49
Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (22-169:30-177)
10 20 30 40 50
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKL
::::.:.::::::: :::::..:::.:::.:
CCDS11 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 VALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN
:.::..::::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: ::
CCDS11 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
70 80 90 100 110 120
120 130 140 150 160
pF1KB6 PADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
:::. ::::::::::.::.:.::::::::::..::.:::. .::. . . : .:.::
CCDS11 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
130 140 150 160 170
>>CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 (152 aa)
initn: 711 init1: 711 opt: 711 Z-score: 973.1 bits: 186.3 E(32554): 7e-48
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:5-152)
10 20 30 40 50 60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
::::.:.::::::: :::::..:::.:::.:::.:...:
CCDS11 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
10 20 30 40
70 80 90 100 110 120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
::: :..:: .:..:::. ::::: :::::::::.::.::.:.:...: :::::. :::
CCDS11 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
50 60 70 80 90 100
130 140 150 160
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
:::::::.::.:.:::::::.::..::.:::. .::. ... : :.::
CCDS11 IRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
110 120 130 140 150
>>CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 (267 aa)
initn: 711 init1: 711 opt: 711 Z-score: 969.3 bits: 186.4 E(32554): 1.1e-47
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:120-267)
10 20 30 40 50
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
::::.:.::::::: :::::..:::.:::.
CCDS32 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
90 100 110 120 130 140
60 70 80 90 100 110
pF1KB6 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
:::.:...:::: :..:: .:..:::. ::::: :::::::::.::.::.:.:...: :
CCDS32 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
150 160 170 180 190 200
120 130 140 150 160
pF1KB6 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
::::. ::::::::::.::.:.:::::::.::..::.:::. .::. ... : :.::
CCDS32 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
210 220 230 240 250 260
>--
initn: 587 init1: 572 opt: 572 Z-score: 780.3 bits: 151.4 E(32554): 3.9e-37
Smith-Waterman score: 572; 69.6% identity (95.5% similar) in 112 aa overlap (22-133:5-116)
10 20 30 40 50 60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
::::.:.::::::: :::::..:::.:::.::.::..::
CCDS32 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQA
10 20 30 40
70 80 90 100 110 120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: :::::. :::
CCDS32 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
50 60 70 80 90 100
130 140 150 160
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
:::::::.::...
CCDS32 IRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHL
110 120 130 140 150 160
>>CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 (187 aa)
initn: 683 init1: 652 opt: 652 Z-score: 891.4 bits: 171.5 E(32554): 2.5e-43
Smith-Waterman score: 652; 61.8% identity (88.9% similar) in 144 aa overlap (22-165:38-181)
10 20 30 40 50
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
:::..:::::::::::::....::::.::
CCDS10 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
::..:..:: : .: ::: .::..::: :..::.:::::::::.: .:::.:::.:: :
CCDS10 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
70 80 90 100 110 120
120 130 140 150 160
pF1KB6 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
. :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :
CCDS10 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
130 140 150 160 170 180
>>CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 (117 aa)
initn: 489 init1: 466 opt: 479 Z-score: 659.2 bits: 127.8 E(32554): 2.1e-30
Smith-Waterman score: 479; 58.6% identity (86.5% similar) in 111 aa overlap (55-165:1-111)
30 40 50 60 70 80
pF1KB6 FLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKY
.:..:: : .: ::: .::..::: :..:
CCDS66 MKMLQAPESVLAEHYQDLRRKPFYPALIRY
10 20 30
90 100 110 120 130 140
pF1KB6 MASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESAR
:.:::::::::.: .:::.:::.:: :. :.: :::::::: .....:.::.:::::.:.
CCDS66 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
40 50 60 70 80 90
150 160
pF1KB6 REIALWFRADELLCWEDSAGHWLYE
::: :::...::. : :.. :
CCDS66 REIQLWFQSSELVSWADGGQHSSIHPA
100 110
>>CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 (82 aa)
initn: 352 init1: 352 opt: 356 Z-score: 494.2 bits: 96.8 E(32554): 3.3e-21
Smith-Waterman score: 356; 66.7% identity (87.2% similar) in 78 aa overlap (22-96:5-82)
10 20 30 40 50 60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
::::.:.::::::: :::::..:::.:::.:::.:...:
CCDS74 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
10 20 30 40
70 80 90 100 110
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAM---VWQGLDVVRTSRALIGATNPADAP
::: :..:: .:..:::. ::::: ::::::: ::
CCDS74 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMEHHSWQ
50 60 70 80
120 130 140 150 160
pF1KB6 PGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
>>CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 (153 aa)
initn: 492 init1: 311 opt: 312 Z-score: 430.3 bits: 85.9 E(32554): 1.2e-17
Smith-Waterman score: 426; 47.2% identity (69.4% similar) in 144 aa overlap (22-165:38-147)
10 20 30 40 50
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
:::..:::::::::::::....::::.::
CCDS73 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
::..:..: ::.: .:::.:::.:: :
CCDS73 LVGMKMLQ----------------------------------VWEGYNVVRASRAMIGHT
70 80 90
120 130 140 150 160
pF1KB6 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
. :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :
CCDS73 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
100 110 120 130 140 150
>>CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 (186 aa)
initn: 210 init1: 116 opt: 251 Z-score: 346.0 bits: 70.5 E(32554): 6e-13
Smith-Waterman score: 251; 37.5% identity (61.8% similar) in 136 aa overlap (20-151:10-145)
10 20 30 40 50
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIV-RRFERKGFKLVALKLVQ
: . :. .:::.: . :. : : ... . : .: .. .
CCDS77 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADA---
.: .. : : . : :: :::..:::::. :.. :... :.:.: : :
CCDS77 WRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHV
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 PPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
: .:::.: . .: :::::: :: :::: .:
CCDS77 APDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSP
120 130 140 150 160 170
CCDS77 EGGVHYVAGTGGLGPA
180
169 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:09:51 2016 done: Sat Nov 5 14:09:52 2016
Total Scan time: 1.930 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]